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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: golgi, nucleus

Predictor Summary:
  • cytosol 5
  • mitochondrion 1
  • cytoskeleton 1
Predictors GFP MS/MS Papers
Winner Takes All:golgi, nucleus
Any Predictor:cytoskeleton, cytosol, mitochondrion
BaCelLo:cytosol
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytoskeleton
YLoc:cytosol
 golgi: 25769308
nucleus: 26228564
msms PMID: 25769308 doi
AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
msms PMID: 26228564 doi
E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS1A01G020500.2
TraesCS1A01G183100.2
TraesCS1A01G274400.1
TraesCS1A01G358600.1
TraesCS1A01G441200.1
TraesCS1B01G024500.1
TraesCS1B01G197600.1
TraesCS1B01G283900.1
TraesCS1B01G375100.1
TraesCS1B01G475700.1
TraesCS1D01G020000.1
TraesCS1D01G186600.1
TraesCS1D01G274400.1
TraesCS1D01G363500.1
TraesCS1D01G449700.1
TraesCS3A01G047800.1
TraesCS3A01G209200.1
TraesCS3A01G249000.1
TraesCS3B01G034400.1
TraesCS3B01G240000.1
TraesCS3B01G277900.1
TraesCS3D01G031900.1
TraesCS3D01G212100.1
TraesCS3D01G249000.1
TraesCS4A01G356100.2
TraesCS5A01G124300.2
TraesCS5A01G416100.1
TraesCS5B01G124100.1
TraesCS5B01G516100.1
TraesCS5D01G132200.1
TraesCS5D01G423800.1
TraesCS5D01G516200.1
TraesCS7A01G047900.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G49240.1 TraesCS1A01G358600.1 AT1G72770.1 19033529
AT1G49240.1 TraesCS1A01G441200.1 AT1G72770.1 19033529
AT1G49240.1 TraesCS1B01G375100.1 AT1G72770.1 19033529
AT1G49240.1 TraesCS1B01G475700.1 AT1G72770.1 19033529
AT1G49240.1 TraesCS1D01G363500.1 AT1G72770.1 19033529
AT1G49240.1 TraesCS1D01G449700.1 AT1G72770.1 19033529
AT1G49240.1 TraesCS3A01G209200.1 AT1G72770.1 19033529
AT1G49240.1 TraesCS3A01G249000.1 AT1G72770.1 19033529
AT1G49240.1 TraesCS3B01G240000.1 AT1G72770.1 19033529
AT1G49240.1 TraesCS3B01G277900.1 AT1G72770.1 19033529
AT1G49240.1 TraesCS3D01G212100.1 AT1G72770.1 19033529
AT1G49240.1 TraesCS3D01G249000.1 AT1G72770.1 19033529
AT1G49240.1 TraesCS7A01G047900.1 AT1G72770.1 19033529
AT5G09810.1 TraesCS1A01G183100.2 AT2G31200.1 21798944
AT5G09810.1 TraesCS1B01G197600.1 AT2G31200.1 21798944
AT5G09810.1 TraesCS1D01G186600.1 AT2G31200.1 21798944
AT5G09810.1 TraesCS5A01G416100.1 AT2G31200.1 21798944
AT5G09810.1 TraesCS5D01G423800.1 AT2G31200.1 21798944
AT5G09810.1 TraesCS3A01G047800.1 AT3G18060.1 21798944
AT5G09810.1 TraesCS3B01G034400.1 AT3G18060.1 21798944
AT5G09810.1 TraesCS3D01G031900.1 AT3G18060.1 21798944
AT5G09810.1 TraesCS1A01G020500.2 AT5G09810.1 21798944
AT5G09810.1 TraesCS1A01G274400.1 AT5G09810.1 21798944
AT5G09810.1 TraesCS1B01G024500.1 AT5G09810.1 21798944
AT5G09810.1 TraesCS1B01G283900.1 AT5G09810.1 21798944
AT5G09810.1 TraesCS1D01G020000.1 AT5G09810.1 21798944
AT5G09810.1 TraesCS1D01G274400.1 AT5G09810.1 21798944
AT5G09810.1 TraesCS4A01G356100.2 AT5G09810.1 21798944
AT5G09810.1 TraesCS5A01G124300.2 AT5G09810.1 21798944
AT5G09810.1 TraesCS5B01G124100.1 AT5G09810.1 21798944
AT5G09810.1 TraesCS5B01G516100.1 AT5G09810.1 21798944
AT5G09810.1 TraesCS5D01G132200.1 AT5G09810.1 21798944
AT5G09810.1 TraesCS5D01G516200.1 AT5G09810.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS1D01G020000.1 Wheat cytosol 100.0 100.0
Os05t0106600-01 Rice nucleus 99.47 99.47
Zm00001d011086_P005 Maize cytosol 98.41 98.41
KXG21029 Sorghum cytosol 98.41 98.41
Zm00001d035720_P002 Maize cytosol 98.41 98.41
TraesCS5B01G516100.1 Wheat cytosol 97.88 97.88
TraesCS5B01G124100.1 Wheat cytosol 97.61 97.61
KRH64098 Soybean cytosol 97.35 97.35
KRH43389 Soybean cytosol 97.35 97.35
KRH59535 Soybean cytosol 97.35 97.35
AT5G09810.1 Thale cress cytosol 97.35 97.35
KRH53856 Soybean endoplasmic reticulum, mitochondrion 85.68 97.29
CDX69885 Canola cytosol 97.08 97.08
TraesCS1B01G201400.1 Wheat cytosol 97.08 97.08
VIT_12s0178g00200.t01 Wine grape cytosol 97.08 97.08
CDY21607 Canola cytosol 97.08 97.08
CDX85794 Canola cytosol 90.72 96.88
CDY30296 Canola cytosol 90.72 96.88
CDY31972 Canola cytosol 90.72 96.88
CDY40061 Canola cytosol 90.72 96.88
Solyc03g078400.2.1 Tomato nucleus, plastid 96.82 96.82
Bra028615.1-P Field mustard cytosol 96.82 96.82
PGSC0003DMT400047481 Potato cytosol 96.82 96.82
Bra009081.1-P Field mustard cytosol 90.45 96.6
CDY56544 Canola cytosol 96.55 96.55
CDX81140 Canola cytosol 96.55 96.55
Zm00001d035722_P007 Maize plasma membrane 98.41 96.36
Solyc11g005330.1.1 Tomato nucleus 96.29 96.29
PGSC0003DMT400010174 Potato cytosol 96.29 96.29
Bra006033.1-P Field mustard cytosol 96.29 96.29
Solyc01g104770.2.1 Tomato nucleus 96.02 96.02
PGSC0003DMT400076499 Potato cytosol 49.07 95.85
KRH43946 Soybean endoplasmic reticulum, mitochondrion, nucleus 94.43 94.43
KRH10484 Soybean endoplasmic reticulum, mitochondrion, nucleus 94.43 94.43
TraesCS1B01G283900.1 Wheat cytosol 92.57 92.82
HORVU1Hr1G002840.6 Barley plasma membrane 100.0 92.63
TraesCS1A01G020500.2 Wheat cytosol 100.0 92.63
Solyc04g071260.2.1 Tomato plastid 92.31 92.31
CDX99315 Canola cytosol 78.25 91.33
AT1G49240.1 Thale cress cytosol 91.25 91.25
Bra022356.1-P Field mustard cytosol 77.98 91.02
AT3G18780.3 Thale cress cytosol 90.98 90.98
CDX82326 Canola cytosol 90.98 90.98
CDX92272 Canola cytosol 90.98 90.98
CDX95498 Canola cytosol 90.98 90.98
CDY18545 Canola cytosol 90.98 90.98
CDY61982 Canola cytosol 90.98 90.98
CDX92271 Canola cytosol 75.86 90.22
PGSC0003DMT400076501 Potato cytosol 46.42 87.5
TraesCS4B01G050600.1 Wheat cytosol 90.45 86.99
KXG21030 Sorghum cytosol 88.59 85.86
GSMUA_Achr2P08030_001 Banana cytosol 77.72 83.71
Bra037560.1-P Field mustard cytoskeleton, cytosol 77.72 83.0
TraesCS3B01G410000.1 Wheat cytosol 88.33 82.43
Zm00001d011087_P001 Maize plastid 98.41 81.72
VIT_04s0044g00580.t01 Wine grape extracellular 96.55 79.13
PGSC0003DMT400087294 Potato mitochondrion 56.23 77.37
PGSC0003DMT400022210 Potato cytosol 68.97 70.65
PGSC0003DMT400022205 Potato cytosol 67.64 69.67
PGSC0003DMT400074882 Potato cytosol 67.64 68.92
PGSC0003DMT400074887 Potato cytosol 64.72 65.95
PGSC0003DMT400088088 Potato cytosol 32.89 63.92
TraesCS3B01G401300.2 Wheat cytosol 44.83 40.62
TraesCS5B01G358500.1 Wheat cytosol 42.18 35.89
TraesCS6B01G189000.1 Wheat cytosol 41.64 35.44
TraesCS5B01G422700.1 Wheat cytosol 33.42 34.81
TraesCS6B01G240500.1 Wheat cytosol 37.93 33.49
TraesCS7B01G211500.1 Wheat cytosol 38.73 33.49
TraesCS1B01G333100.1 Wheat cytosol 32.63 28.6
TraesCS2B01G597500.1 Wheat cytosol 32.63 28.6
Protein Annotations
EnsemblPlants:TraesCS1B01G024500.1EnsemblPlantsGene:TraesCS1B01G024500Gene3D:3.30.420.40Gene3D:3.90.640.10InterPro:ActinInterPro:Actin/actin-like_CS
InterPro:Actin_CSPANTHER:PTHR11937PANTHER:PTHR11937:SF252PFAM:PF00022PRINTS:PR00190ScanProsite:PS00406
ScanProsite:PS00432ScanProsite:PS01132SMART:SM00268SUPFAM:SSF53067TIGR:cd00012MapMan:20.2.1
Description
No Description!
Coordinates
chr1B:+:11858237..11859798
Molecular Weight (calculated)
41730.1 Da
IEP (calculated)
5.057
GRAVY (calculated)
-0.197
Length
377 amino acids
Sequence
(BLAST)
001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN VPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDS LMKILTERGY
201: SFTTSAEREI VRDIKEKLAY VALDYEQELE TAKNSSSVEK SYELPDGQVI TIGAERFRCP EVLFQPSMIG MESSGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIS KDEYDESGPA IVHRKCF
Best Arabidopsis Sequence Match ( AT2G37620.4 )
(BLAST)
001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF
Arabidopsis Description
ACT1Actin-3 [Source:UniProtKB/Swiss-Prot;Acc:P0CJ47]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.