Factsheet for Solyc01g104770.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 5
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0178g00200.t01	Wine grape	cytosol	97.61	97.61
PGSC0003DMT400076499	Potato	cytosol	49.87	97.41
GSMUA_Achr2P16160_001	Banana	cytosol	97.08	97.08
TraesCS5D01G516200.1	Wheat	cytosol	96.82	96.82
HORVU5Hr1G117900.1	Barley	cytosol	96.82	96.82
TraesCS5B01G516100.1	Wheat	cytosol	96.82	96.82
Os05t0106600-01	Rice	nucleus	96.55	96.55
TraesCS5B01G124100.1	Wheat	cytosol	96.55	96.55
GSMUA_Achr6P25350_001	Banana	cytosol	96.55	96.55
Solyc03g078400.2.1	Tomato	nucleus, plastid	96.55	96.55
GSMUA_Achr7P10410_001	Banana	cytosol	96.55	96.55
TraesCS4A01G356100.2	Wheat	cytosol	96.82	96.31
Solyc11g005330.1.1	Tomato	nucleus	96.29	96.29
GSMUA_Achr9P03170_001	Banana	cytosol	96.02	96.28
Os03t0836000-01	Rice	plasma membrane, plastid	96.02	96.02
Os11t0163100-01	Rice	nucleus, plasma membrane, plastid	96.02	96.02
Solyc04g011500.2.1	Tomato	extracellular, nucleus, plastid, unclear	96.02	96.02
TraesCS1D01G020000.1	Wheat	cytosol	96.02	96.02
TraesCS1B01G024500.1	Wheat	golgi, nucleus	96.02	96.02
GSMUA_Achr10P...	Banana	cytosol	96.02	96.02
EES08028	Sorghum	cytosol	96.02	96.02
GSMUA_Achr9P08850_001	Banana	cytosol	88.86	95.99
GSMUA_Achr8P16150_001	Banana	cytosol	95.76	95.76
GSMUA_Achr3P02960_001	Banana	cytosol	95.76	95.76
Zm00001d011086_P005	Maize	cytosol	95.76	95.76
Zm00001d035720_P002	Maize	cytosol	95.76	95.76
KXG21029	Sorghum	cytosol	95.76	95.76
KXG23031	Sorghum	cytosol	95.76	95.76
Zm00001d053177_P004	Maize	cytosol	95.76	95.76
GSMUA_Achr6P34320_001	Banana	cytosol	61.8	95.49
EER90564	Sorghum	cytosol	95.49	95.49
Os01t0964133-01	Rice	plasma membrane	95.49	95.49
GSMUA_Achr8P02660_001	Banana	cytosol	95.49	95.49
GSMUA_Achr5P29190_001	Banana	cytosol	88.06	95.4
Solyc10g080500.1.1	Tomato	extracellular, nucleus, plastid, unclear	95.23	95.23
Solyc05g054480.2.1	Tomato	extracellular, nucleus, plastid, unclear	94.96	94.96
Solyc11g065990.1.1	Tomato	nucleus, plastid, unclear	94.96	94.96
Zm00001d019635_P001	Maize	cytosol	34.75	94.93
GSMUA_Achr11P...	Banana	cytosol	87.8	94.84
KRH43946	Soybean	endoplasmic reticulum, mitochondrion, nucleus	94.43	94.43
KRH10484	Soybean	endoplasmic reticulum, mitochondrion, nucleus	94.43	94.43
Solyc06g076090.2.1	Tomato	unclear	94.43	94.43
GSMUA_Achr11P...	Banana	cytosol	94.16	94.16
Zm00001d035722_P007	Maize	plasma membrane	95.76	93.77
Zm00001d012277_P001	Maize	cytosol	93.1	93.35
Solyc10g086460.1.1	Tomato	unclear	93.1	93.1
Os05t0438800-01	Rice	plasma membrane, plastid	92.84	93.09
TraesCS5D01G132200.1	Wheat	golgi	91.51	92.99
EES01810	Sorghum	cytosol	92.57	92.82
Zm00001d010159_P002	Maize	extracellular, plasma membrane	92.31	92.55
PGSC0003DMT400076501	Potato	cytosol	49.07	92.5
EES19603	Sorghum	cytosol	92.04	92.29
Zm00001d042731_P002	Maize	extracellular, plasma membrane, plastid	92.04	92.29
TraesCS1A01G274400.1	Wheat	golgi	92.04	92.29
TraesCS1B01G283900.1	Wheat	cytosol	92.04	92.29
TraesCS1D01G274400.1	Wheat	cytosol	92.04	92.29
HORVU1Hr1G074350.1	Barley	cytosol	92.04	92.29
Zm00001d034761_P002	Maize	cytosol	95.49	91.84
Solyc04g071260.2.1	Tomato	plastid	91.25	91.25
Zm00001d016605_P001	Maize	cytosol	38.2	91.14
TraesCS5A01G124300.2	Wheat	golgi	96.55	89.0
TraesCS1A01G020500.2	Wheat	cytosol	96.02	88.94
HORVU1Hr1G002840.6	Barley	plasma membrane	96.02	88.94
Solyc09g010750.1.1	Tomato	cytosol	41.38	87.15
GSMUA_Achr10P...	Banana	cytosol	63.13	86.55
Zm00001d016508_P001	Maize	cytosol	31.03	84.78
KXG21030	Sorghum	cytosol	86.74	84.06
Zm00001d008746_P001	Maize	cytosol	61.27	84.0
GSMUA_Achr2P08030_001	Banana	cytosol	77.19	83.14
Zm00001d019396_P001	Maize	cytosol	36.07	80.95
Zm00001d011087_P001	Maize	plastid	95.76	79.52
Zm00001d007792_P001	Maize	cytosol	55.17	78.79
Zm00001d003298_P001	Maize	cytosol	53.32	76.43
HORVU5Hr1G039850.3	Barley	mitochondrion	92.57	75.05
Zm00001d004087_P001	Maize	cytosol	41.38	72.22
Os01t0866100-01	Rice	plasma membrane	37.67	69.95
Zm00001d004855_P002	Maize	cytoskeleton, cytosol, nucleus	95.23	60.85
Solyc02g094320.2.1	Tomato	cytosol	44.56	43.19
Solyc11g008500.1.1	Tomato	cytosol, nucleus	38.2	40.0
Solyc12g037980.1.1	Tomato	nucleus	44.3	38.39
Zm00001d034421_P004	Maize	plastid	45.62	36.75
Solyc05g013940.2.1	Tomato	cytosol	38.99	34.27
Solyc04g024530.2.1	Tomato	cytosol	38.73	34.03
Solyc05g018600.2.1	Tomato	cytosol	32.63	28.08

Protein Annotations

EnsemblPlants:Solyc01g104770.2.1	EnsemblPlantsGene:Solyc01g104770.2	Gene3D:3.30.420.40	Gene3D:3.90.640.10	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	InterPro:Actin	InterPro:Actin/actin-like_CS	InterPro:Actin_CS	PANTHER:PTHR11937
PANTHER:PTHR11937:SF358	PFAM:PF00022	PRINTS:PR00190	ScanProsite:PS00406	ScanProsite:PS00432	ScanProsite:PS01132
SMART:SM00268	SUPFAM:SSF53067	UniParc:UPI0002768B83	UniProt:K4B249	MapMan:20.2.1	:

Description

No Description!

Coordinates

chr1:-:93136983..93139819

Molecular Weight (calculated)

41673.1 Da

IEP (calculated)

5.159

GRAVY (calculated)

-0.164

Length

377 amino acids

Sequence
(BLAST)

001: MADAEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVSP
101: DEHPVLLTEA PLNPKANREK MTQIMFETFN VPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDC LMKILTERGY
201: SFTTSAEREI VRDMKEKLAY VALDYEQELE TARSSSAVEK SYELPDGQVI TIGAERFRCP EVLFQPSLVG MEAAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIT KGEYDESGPS IVHRKCF

Best Arabidopsis Sequence Match ( AT5G09810.1 )
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN VPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDS LMKILTERGY
201: MFTTTAEREI VRDIKEKLAY VALDYEQELE TAKSSSSVEK NYELPDGQVI TIGAERFRCP EVLFQPSLIG MEAPGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGSTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIS KSEYDESGPS IVHRKCF

Arabidopsis Description

ACT7AtACT7 [Source:UniProtKB/TrEMBL;Acc:A0A178UEW4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.