Factsheet for Solyc09g010750.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g093290.2.1
Solyc03g044430.2.1
Solyc09g010750.1.1
Solyc10g086460.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37620.1	Solyc02g093290.2.1	AT2G23420.1	21798944
AT2G37620.1	Solyc03g044430.2.1	AT2G23420.1	21798944
AT2G37620.1	Solyc09g010750.1.1	AT2G37620.1	21798944
AT2G37620.1	Solyc10g086460.1.1	AT2G37620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71336	Canola	cytosol	75.98	49.45
PGSC0003DMT400023026	Potato	cytosol	93.85	44.56
CDY48688	Canola	cytosol	84.36	44.41
Bra020319.1-P	Field mustard	cytosol	84.36	44.41
CDX73527	Canola	cytosol	86.59	43.91
AT2G37620.1	Thale cress	cytosol	87.71	41.64
AT3G53750.2	Thale cress	cytosol	87.71	41.64
Solyc04g011500.2.1	Tomato	extracellular, nucleus, plastid, unclear	87.71	41.64
GSMUA_AchrUn_...	Banana	plasma membrane	87.71	41.64
Solyc01g104770.2.1	Tomato	nucleus	87.15	41.38
Bra014865.1-P	Field mustard	cytosol	87.15	41.38
CDX76191	Canola	cytosol	87.15	41.38
Solyc10g086460.1.1	Tomato	unclear	87.15	41.38
Bra000010.1-P	Field mustard	cytosol	87.15	41.38
CDX74944	Canola	cytosol	86.59	41.11
CDX78202	Canola	cytosol	86.59	41.11
CDX91373	Canola	cytosol	86.59	41.11
AT3G12110.1	Thale cress	cytosol	86.59	41.11
Solyc05g054480.2.1	Tomato	extracellular, nucleus, plastid, unclear	86.59	41.11
Bra007025.1-P	Field mustard	cytosol	86.59	41.11
Solyc11g065990.1.1	Tomato	nucleus, plastid, unclear	86.59	41.11
Solyc03g078400.2.1	Tomato	nucleus, plastid	86.03	40.85
Bra017166.1-P	Field mustard	cytosol	86.03	40.85
Solyc10g080500.1.1	Tomato	extracellular, nucleus, plastid, unclear	86.03	40.85
CDY30846	Canola	cytosol	86.03	40.85
Bra034778.1-P	Field mustard	cytosol	85.47	40.58
Solyc11g005330.1.1	Tomato	nucleus	85.47	40.58
CDY08455	Canola	cytosol	85.47	40.58
CDY01102	Canola	cytosol	85.47	40.58
Bra006719.1-P	Field mustard	cytosol	74.86	40.36
Solyc06g076090.2.1	Tomato	unclear	84.92	40.32
CDX99111	Canola	cytosol	84.92	40.32
AT5G59370.2	Thale cress	cytosol	84.92	40.32
Bra018210.1-P	Field mustard	cytosol	84.92	40.32
Bra033819.1-P	Field mustard	cytosol	84.92	40.32
CDX71119	Canola	cytosol	84.92	40.32
CDX82985	Canola	cytosol	84.92	40.32
AT3G46520.2	Thale cress	cytosol	84.92	40.32
CDX86081	Canola	cytosol	84.92	40.32
CDX88698	Canola	cytosol	84.92	40.32
CDX93360	Canola	cytosol	74.3	40.18
CDY65255	Canola	cytosol	74.3	40.18
CDY38066	Canola	cytosol	84.36	40.05
Bra019486.1-P	Field mustard	cytosol	84.36	40.05
CDY53444	Canola	cytosol	84.36	40.05
CDY21777	Canola	cytosol	84.36	40.05
Solyc04g071260.2.1	Tomato	plastid	83.24	39.52
CDX94448	Canola	cytosol	83.24	38.5
Bra003156.1-P	Field mustard	cytosol	43.58	37.86
CDY07779	Canola	cytosol	73.18	37.22
Bra005178.1-P	Field mustard	cytosol	72.63	36.72
CDX79746	Canola	cytosol	73.18	35.22
GSMUA_Achr10P...	Banana	cytosol	50.84	34.6
GSMUA_Achr7P18630_001	Banana	cytosol	59.22	33.12
CDX67573	Canola	cytosol	53.63	31.58
Bra002571.1-P	Field mustard	nucleus	84.92	25.12
CDY33033	Canola	nucleus	73.74	24.4
CDX80274	Canola	nucleus	72.07	23.5
Solyc02g094320.2.1	Tomato	cytosol	47.49	21.85
Solyc11g008500.1.1	Tomato	cytosol, nucleus	31.84	15.83
Solyc05g013940.2.1	Tomato	cytosol	36.87	15.38
Solyc12g037980.1.1	Tomato	nucleus	36.87	15.17
Solyc04g024530.2.1	Tomato	cytosol	35.2	14.69
Solyc05g018600.2.1	Tomato	cytosol	26.82	10.96

Protein Annotations

EnsemblPlants:Solyc09g010750.1.1	EnsemblPlantsGene:Solyc09g010750.1	Gene3D:3.30.420.40	InterPro:Actin	PANTHER:PTHR11937	PANTHER:PTHR11937:SF355
PFAM:PF00022	SMART:SM00268	SUPFAM:SSF53067	UniParc:UPI000276AF2B	UniProt:K4CRA2	MapMan:35.1

Description

No Description!

Coordinates

chr9:+:4054598..4055479

Molecular Weight (calculated)

19668.6 Da

IEP (calculated)

4.518

GRAVY (calculated)

-0.068

Length

179 amino acids

Sequence
(BLAST)

001: MADVEDIQPL VCDNGTSMVK MYAIQVVLSL YASGRTTGIV LDSGDGVSHT VPISEGYALP HVDLAGRDLT EYMVKILTER GYSFTTSELE TTKTGSAVEK
101: NYELPDEQVI TIGAERFRCP KVLYQPSLIR MEVAGIHETT YNSIMKCDVD IRKDLYGNIV LSGGSTMFPG IADRMSKEI

Best Arabidopsis Sequence Match ( AT2G37620.1 )
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF

Arabidopsis Description

ACT1Actin-3 [Source:UniProtKB/Swiss-Prot;Acc:P0CJ47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.