Factsheet for Bra005178.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000010.1-P
Bra005178.1-P
Bra017166.1-P
Bra039198.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37620.1	Bra039198.1-P	AT2G23420.1	21798944
AT2G37620.1	Bra000010.1-P	AT2G37620.1	21798944
AT2G37620.1	Bra005178.1-P	AT2G37620.1	21798944
AT2G37620.1	Bra017166.1-P	AT2G37620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74944	Canola	cytosol	99.44	93.37
CDX91373	Canola	cytosol	99.44	93.37
Bra000010.1-P	Field mustard	cytosol	98.59	92.57
Bra017166.1-P	Field mustard	cytosol	98.31	92.31
Bra007025.1-P	Field mustard	cytosol	97.74	91.78
Bra014865.1-P	Field mustard	cytosol	97.46	91.51
AT2G37620.1	Thale cress	cytosol	97.18	91.25
Bra033819.1-P	Field mustard	cytosol	96.33	90.45
Bra003156.1-P	Field mustard	cytosol	52.54	90.29
Bra018210.1-P	Field mustard	cytosol	96.05	90.19
Bra019486.1-P	Field mustard	cytosol	96.05	90.19
KRH38098	Soybean	cytosol	95.76	89.92
GSMUA_AchrUn_...	Banana	plasma membrane	95.76	89.92
KRH71847	Soybean	endoplasmic reticulum, nucleus	95.48	89.66
KRH10268	Soybean	mitochondrion, nucleus	95.48	89.66
KRH56507	Soybean	endoplasmic reticulum, mitochondrion	95.2	89.39
VIT_06s0004g04570.t01	Wine grape	cytosol	94.92	89.36
KRH29804	Soybean	endoplasmic reticulum, mitochondrion, nucleus	94.92	89.12
VIT_13s0019g01240.t01	Wine grape	cytosol	94.92	89.12
KRH23061	Soybean	endoplasmic reticulum, mitochondrion, nucleus	94.92	89.12
KRG93168	Soybean	mitochondrion, nucleus	94.92	89.12
Bra020319.1-P	Field mustard	cytosol	85.59	89.12
KRH67068	Soybean	endoplasmic reticulum, mitochondrion, nucleus	94.63	88.86
KRG95386	Soybean	cytosol	94.63	88.86
Bra006719.1-P	Field mustard	cytosol	83.33	88.86
VIT_08s0007g06520.t01	Wine grape	cytosol	94.35	88.59
KRH01660	Soybean	mitochondrion, nucleus	94.35	88.59
KRH70465	Soybean	mitochondrion, nucleus	94.35	88.59
Bra034778.1-P	Field mustard	cytosol	94.07	88.33
Bra028615.1-P	Field mustard	cytosol	94.07	88.33
GSMUA_Achr10P...	Banana	cytosol	65.25	87.83
PGSC0003DMT400023026	Potato	cytosol	93.5	87.8
Bra006033.1-P	Field mustard	cytosol	93.22	87.53
Bra009081.1-P	Field mustard	cytosol	87.01	87.25
Solyc10g086460.1.1	Tomato	unclear	92.09	86.47
PGSC0003DMT400049429	Potato	cytosol	92.09	86.47
GSMUA_Achr7P18630_001	Banana	cytosol	77.68	85.94
Bra022356.1-P	Field mustard	cytosol	75.42	82.66
Bra037560.1-P	Field mustard	cytoskeleton, cytosol	81.64	81.87
KRH24799	Soybean	cytosol	90.4	78.05
Solyc09g010750.1.1	Tomato	cytosol	36.72	72.63
Bra016895.1-P	Field mustard	cytosol	61.02	71.29
Bra002571.1-P	Field mustard	nucleus	95.76	56.03
Bra039097.1-P	Field mustard	cytosol	45.2	41.13
Bra025243.1-P	Field mustard	cytosol	41.81	40.44
Bra003429.1-P	Field mustard	cytosol	37.85	37.22
Bra016738.1-P	Field mustard	cytosol	38.7	32.08
Bra019815.1-P	Field mustard	cytosol	38.14	31.62
Bra007566.1-P	Field mustard	cytosol	27.97	30.18
Bra030818.1-P	Field mustard	cytosol	15.54	24.77
Bra019816.1-P	Field mustard	nucleus	11.3	10.61

Protein Annotations

Gene3D:2.30.36.70	MapMan:20.2.1	Gene3D:3.30.420.40	Gene3D:3.90.640.10	InterPro:Actin	InterPro:Actin/actin-like_CS
InterPro:Actin_CS	EnsemblPlantsGene:Bra005178	EnsemblPlants:Bra005178.1	EnsemblPlants:Bra005178.1-P	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	UniProt:M4CLU1	PFAM:PF00022	PRINTS:PR00190	ScanProsite:PS00406
ScanProsite:PS00432	ScanProsite:PS01132	PANTHER:PTHR11937	PANTHER:PTHR11937:SF276	SMART:SM00268	SUPFAM:SSF53067
UniParc:UPI00025478C9	:	:	:	:	:

Description

AT2G37620 (E=1e-155) ACT1, AAc1 | ACT1 (ACTIN 1); structural constituent of cytoskeleton

Coordinates

chrA05:-:3851692..3857846

Molecular Weight (calculated)

39162.0 Da

IEP (calculated)

5.022

GRAVY (calculated)

-0.201

Length

354 amino acids

Sequence
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA FMKILTERGY
201: SFPTTAEREI VRDIKEKLCY IALDYEQELE TSNTNSSVEK NYEMPDGQVI TIGAERFRCP EVLYQPSMIG MENPGLVLSG GTTMFPGIAD RMSKEITALA
301: PSSMKIKVVA PPERKYSVWI GGSILASLST FQQMWIAKAE YDESGPSIVH RKCF

Best Arabidopsis Sequence Match ( AT2G37620.1 )
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF

Arabidopsis Description

ACT1Actin-3 [Source:UniProtKB/Swiss-Prot;Acc:P0CJ47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.