Factsheet for VIT_06s0004g04570.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0004g04570.t01
VIT_07s0031g00460.t01
VIT_08s0007g06520.t01
VIT_13s0019g01240.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37620.1	VIT_07s0031g00460.t01	AT2G23420.1	21798944
AT2G37620.1	VIT_06s0004g04570.t01	AT2G37620.1	21798944
AT2G37620.1	VIT_08s0007g06520.t01	AT2G37620.1	21798944
AT2G37620.1	VIT_13s0019g01240.t01	AT2G37620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	68.88	98.48
VIT_08s0007g06520.t01	Wine grape	cytosol	98.67	98.41
GSMUA_AchrUn_...	Banana	plasma membrane	98.4	98.14
KRH10268	Soybean	mitochondrion, nucleus	98.4	98.14
KRH29804	Soybean	endoplasmic reticulum, mitochondrion, nucleus	98.14	97.88
KRH23061	Soybean	endoplasmic reticulum, mitochondrion, nucleus	97.87	97.61
AT3G12110.1	Thale cress	cytosol	97.07	96.82
AT3G53750.2	Thale cress	cytosol	97.07	96.82
VIT_13s0019g01240.t01	Wine grape	cytosol	97.07	96.82
VIT_12s0178g00200.t01	Wine grape	cytosol	97.07	96.82
AT2G37620.1	Thale cress	cytosol	97.07	96.82
Bra034778.1-P	Field mustard	cytosol	96.81	96.55
CDX76191	Canola	cytosol	96.81	96.55
Bra014865.1-P	Field mustard	cytosol	96.81	96.55
CDY01102	Canola	cytosol	96.81	96.55
CDY30846	Canola	cytosol	96.81	96.55
CDY08455	Canola	cytosol	96.54	96.29
CDX78202	Canola	cytosol	96.54	96.29
Bra007025.1-P	Field mustard	cytosol	96.54	96.29
CDX73527	Canola	cytosol	90.16	96.03
Bra033819.1-P	Field mustard	cytosol	96.28	96.02
AT3G46520.2	Thale cress	cytosol	96.28	96.02
Bra000010.1-P	Field mustard	cytosol	96.28	96.02
CDX82985	Canola	cytosol	96.28	96.02
Bra006719.1-P	Field mustard	cytosol	84.57	95.78
CDX71119	Canola	cytosol	96.01	95.76
AT5G59370.2	Thale cress	cytosol	96.01	95.76
CDY53444	Canola	cytosol	96.01	95.76
CDY38066	Canola	cytosol	96.01	95.76
CDY21777	Canola	cytosol	96.01	95.76
CDX99111	Canola	cytosol	96.01	95.76
Bra017166.1-P	Field mustard	cytosol	96.01	95.76
CDX91373	Canola	cytosol	96.01	95.76
CDX88698	Canola	cytosol	96.01	95.76
CDX86081	Canola	cytosol	96.01	95.76
Bra018210.1-P	Field mustard	cytosol	96.01	95.76
Bra019486.1-P	Field mustard	cytosol	96.01	95.76
CDX74944	Canola	cytosol	96.01	95.76
CDY48688	Canola	cytosol	86.44	95.59
Bra020319.1-P	Field mustard	cytosol	86.44	95.59
CDX93360	Canola	cytosol	84.04	95.47
CDY65255	Canola	cytosol	84.04	95.47
CDY07779	Canola	cytosol	89.36	95.45
Bra005178.1-P	Field mustard	cytosol	89.36	94.92
GSMUA_Achr7P18630_001	Banana	cytosol	80.05	94.06
CDX94448	Canola	cytosol	93.35	90.7
CDX79746	Canola	cytosol	89.36	90.32
Bra003156.1-P	Field mustard	cytosol	48.94	89.32
KRH24799	Soybean	cytosol	93.62	85.85
VIT_04s0044g00580.t01	Wine grape	extracellular	97.07	79.35
CDY71336	Canola	cytosol	56.12	76.73
CDX67573	Canola	cytosol	55.85	69.08
VIT_11s0016g00770.t01	Wine grape	cytosol	67.29	67.29
Bra002571.1-P	Field mustard	nucleus	95.74	59.5
CDY33033	Canola	nucleus	78.19	54.34
CDX80274	Canola	nucleus	77.13	52.82
VIT_14s0068g01630.t01	Wine grape	cytosol	44.41	42.93
VIT_13s0064g00730.t01	Wine grape	cytosol	37.23	38.78
VIT_01s0137g00280.t01	Wine grape	cytosol	39.63	34.81
VIT_00s0214g00170.t01	Wine grape	cytosol	14.89	32.0
VIT_17s0000g04010.t01	Wine grape	mitochondrion	34.04	28.96
VIT_11s0016g05490.t01	Wine grape	cytosol	32.71	28.41

Protein Annotations

EntrezGene:100246726	wikigene:100246726	MapMan:20.2.1	Gene3D:3.30.420.40	Gene3D:3.90.640.10	EMBL:AM429188
InterPro:Actin	InterPro:Actin/actin-like_CS	InterPro:Actin_CS	ProteinID:CAN69147	ProteinID:CAN69147.1	ProteinID:CBI16148
ProteinID:CBI16148.3	ncoils:Coil	UniProt:D7SKH2	EMBL:FN594951	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	EntrezGene:LOC100246726	wikigene:LOC100246726	PFAM:PF00022	PRINTS:PR00190
ScanProsite:PS00406	ScanProsite:PS00432	ScanProsite:PS01132	PANTHER:PTHR11937	PANTHER:PTHR11937:SF355	SMART:SM00268
SUPFAM:SSF53067	UniParc:UPI00015C76E4	ArrayExpress:VIT_06s0004g04570	EnsemblPlantsGene:VIT_06s0004g04570	EnsemblPlants:VIT_06s0004g04570.t01	RefSeq:XP_002283939
RefSeq:XP_002283939.1	RefSeq:XP_010651027.1	:	:	:	:

Description

No Description!

Coordinates

chr6:+:5548602..5552089

Molecular Weight (calculated)

41586.0 Da

IEP (calculated)

5.166

GRAVY (calculated)

-0.166

Length

376 amino acids

Sequence
(BLAST)

001: MAEEDIQPLV CDNGTGMVKA GFAGDDAPRA VFPSIVGRPR HTGVMVGMGQ KDAYVGDEAQ SKRGILTLKY PIEHGIVSNW DDMEKIWHHT FYNELRVAPE
101: EHPVLLTEAP LNPKANREKM TQIMFETFNA PAMYVAIQAV LSLYASGRTT GIVLDSGDGV SHTVPIYEGY ALPHAILRLD LAGRDLTDAL MKILTERGYS
201: FTTTAEREIV RDVKEKLAYI ALDYEQELET AKTSSSVEKS YELPDGQMIT IGAERFRCPE VLFQPSMIGM EAAGIHETTY NSIMKCDVDI RKDLYGNIVL
301: SGGSTMFPGI ADRMSKEITA LAPSSMKIKV VAPPERKYSV WIGGSILASL STFQQMWIAK AEYDESGPSI VHRKCF

Best Arabidopsis Sequence Match ( AT2G37620.4 )
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF

Arabidopsis Description

ACT1Actin-3 [Source:UniProtKB/Swiss-Prot;Acc:P0CJ47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.