Factsheet for VIT_11s0016g05490.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_08s0007g06370.t01
VIT_08s0007g08060.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G33520.1	VIT_08s0007g06370.t01	AT3G12810.1	17142478
AT3G33520.1	VIT_08s0007g06370.t01	AT3G12810.1	17470967
AT3G33520.1	VIT_08s0007g08060.t01	AT5G37055.1	17142478
AT3G33520.1	VIT_08s0007g08060.t01	AT5G37055.1	17470967

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61849	Soybean	cytosol, nucleus	78.52	77.98
PGSC0003DMT400038724	Potato	cytosol	78.29	77.4
Solyc05g018600.2.1	Tomato	cytosol	78.06	77.17
GSMUA_AchrUn_...	Banana	cytosol	70.67	70.34
Bra030818.1-P	Field mustard	cytosol	35.57	69.37
AT3G33520.1	Thale cress	cytosol	67.44	69.36
CDY42404	Canola	cytosol	68.36	69.32
Zm00001d024059_P002	Maize	cytosol	68.59	69.07
OQU79631	Sorghum	cytosol	68.59	68.75
HORVU0Hr1G005770.1	Barley	cytosol	67.67	68.14
TraesCS2D01G600800.1	Wheat	cytosol	67.67	68.14
TraesCS2B01G597500.1	Wheat	cytosol	67.67	68.14
TraesCS2A01G585700.1	Wheat	cytosol	67.67	68.14
Os01t0269900-01	Rice	cytosol	67.44	68.07
TraesCS1B01G333100.1	Wheat	cytosol	67.44	67.91
VIT_12s0178g00200.t01	Wine grape	cytosol	28.87	33.16
VIT_06s0004g04570.t01	Wine grape	cytosol	28.41	32.71
VIT_08s0007g06520.t01	Wine grape	cytosol	28.41	32.63
VIT_13s0019g01240.t01	Wine grape	cytosol	28.18	32.36
VIT_11s0016g00770.t01	Wine grape	cytosol	26.56	30.59
VIT_14s0068g01630.t01	Wine grape	cytosol	25.64	28.53
VIT_04s0044g00580.t01	Wine grape	extracellular	28.64	26.96
VIT_01s0137g00280.t01	Wine grape	cytosol	24.71	25.0
VIT_13s0064g00730.t01	Wine grape	cytosol	20.55	24.65
VIT_00s0214g00170.t01	Wine grape	cytosol	9.7	24.0
VIT_17s0000g04010.t01	Wine grape	mitochondrion	20.09	19.68

Protein Annotations

EntrezGene:100247472	wikigene:100247472	MapMan:35.1	InterPro:Actin	InterPro:Arp6	ProteinID:CBI28215
ProteinID:CBI28215.3	UniProt:D7TC30	EMBL:FN595756	GO:GO:0000003	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006338	GO:GO:0006355	GO:GO:0006950
GO:GO:0006970	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008283	GO:GO:0009058
GO:GO:0009266	GO:GO:0009628	GO:GO:0009791	GO:GO:0009845	GO:GO:0009908	GO:GO:0009910
GO:GO:0009987	GO:GO:0016043	EntrezGene:LOC100247472	wikigene:LOC100247472	PFAM:PF00022	PANTHER:PTHR11937
PANTHER:PTHR11937:SF47	SMART:SM00268	SUPFAM:SSF53067	UniParc:UPI00019844DC	ArrayExpress:VIT_11s0016g05490	EnsemblPlantsGene:VIT_11s0016g05490
EnsemblPlants:VIT_11s0016g05490.t01	RefSeq:XP_002285295	RefSeq:XP_002285295.1	RefSeq:XP_010656438.1	RefSeq:XP_019078647.1	SEG:seg

Description

No Description!

Coordinates

chr11:-:4862600..4867055

Molecular Weight (calculated)

48617.4 Da

IEP (calculated)

6.020

GRAVY (calculated)

-0.211

Length

433 amino acids

Sequence
(BLAST)

001: MTTSNVVVLD NGGGLIKAGI GGERDPSAVI PNCMGKPPSS KKWLMGDQLH SHSDLTSVSL RRPFDRGYLL NPDLQRDIWS HLFSNLLRIS PSQSSLLLVE
101: PLFNLPSIQR SIDELVFEDL GFRSLFVADS PSLVHLYEAS HCPYGLLAKS QCSLVVDCGF SFTHAAPVFQ NFTINYAVKR LDLGGKALTN YLKELVSYRA
201: VNVMDETFIM DDVKEKLCFV SLDVPRDLQI ARRPGKDNLF RCTYVLPDGI TYMKGFVKDP NEAGRYRTLD GGAPPSTVTK EDMDQHEVTE KPEDRRRIDL
301: TKTEFNLTNE RFLVPEMIFR PADLGMNQAG LAECIIRAVN SCHPDLHPVL YQSIILTGGS TLFPQFAQRL EMELRPLVPD DYQVKITTQE DPILGVWRGG
401: SLLASSPDFE AMCVTKSEYE ELGSARCRKR FFH

Best Arabidopsis Sequence Match ( AT3G33520.1 )
(BLAST)

001: MSNIVVLDNG GGLIKAGQGG ERDPTTVIPN CLYKPLSSKK FIHPSPLTTL SDEIDLTSAA VRRPIDRGYL INSDLQREIW SHLFTSLLHI APSSSSLLLT
101: EAPLSIPSVQ RTTDELVFED FGFSSLYIAH PQSLVHLYEA SRQPDSILSK TQCSLVVDCG FSFTHAVPVL HNFTLNHAIK RIDLGGKAFT NYLKELVSYR
201: SINVMDETFL VDDAKEKLCF VSLDLLRDLR LARNGNTLIK STYVLPDGVT HTKGYVKDPQ AAKRFLSLSE KESVVVMDKV GERKKADMNK NEIDLTNERF
301: LVPETLFQPA DLGMNQAGLA ECIVRAINSC HSYLQPVLYQ SIILTGGSTL FPQLKERLEG ELRPLVPDHF DVKITTQEDP ILGVWRGGSL LASSPDFESM
401: CVTKAEYEEL GSARCRRRFF H

Arabidopsis Description

ARP6SUF3 [Source:UniProtKB/TrEMBL;Acc:A0A178U6Y1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.