Factsheet for VIT_01s0137g00280.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0211g00050.t01
VIT_08s0058g00770.t01
VIT_14s0068g01630.t01
VIT_16s0098g01720.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13180.1	VIT_08s0058g00770.t01	AT1G29170.1	17267444
AT1G13180.1	VIT_00s0211g00050.t01	AT2G22640.1	17267444
AT1G13180.1	VIT_14s0068g01630.t01	AT3G27000.1	17267444
AT1G13180.1	VIT_16s0098g01720.t01	AT3G49290.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400027956	Potato	cytosol	92.06	91.42
Solyc05g013940.2.1	Tomato	cytosol	91.59	91.38
KRH59228	Soybean	nucleus	89.72	89.72
Solyc04g024530.2.1	Tomato	cytosol	89.02	88.81
GSMUA_Achr6P21120_001	Banana	cytosol	87.62	87.82
AT1G13180.1	Thale cress	cytosol	86.22	86.42
Os02t0596900-01	Rice	cytosol	85.98	85.98
Bra016738.1-P	Field mustard	cytosol	85.28	85.48
CDY34585	Canola	cytosol	85.28	85.48
TraesCS6D01G194100.1	Wheat	cytosol	85.05	85.25
CDY21087	Canola	cytosol	85.05	85.25
TraesCS6B01G240500.1	Wheat	cytosol	85.05	85.25
CDX98005	Canola	cytosol	85.05	85.25
Bra019815.1-P	Field mustard	cytosol	85.05	85.25
TraesCS6A01G211000.1	Wheat	cytosol	85.05	85.25
CDY19392	Canola	cytosol	84.81	85.01
GSMUA_Achr2P05970_001	Banana	cytosol	35.05	84.75
Zm00001d017106_P001	Maize	cytosol	85.28	84.3
GSMUA_Achr9P07630_001	Banana	cytosol	84.11	84.11
KXG30555	Sorghum	cytosol	84.81	83.83
KRH59222	Soybean	cytosol	36.45	81.25
HORVU6Hr1G053910.4	Barley	cytosol	82.71	80.09
Zm00001d050981_P001	Maize	cytosol	83.88	78.21
GSMUA_Achr2P05960_001	Banana	cytosol	54.21	75.82
GSMUA_Achr8P01270_001	Banana	cytosol	73.13	73.3
KXG24330	Sorghum	cytosol	72.66	71.49
Zm00001d049629_P002	Maize	nucleus	59.81	69.57
TraesCS7A01G311700.1	Wheat	cytosol	70.33	69.04
TraesCS7B01G211500.1	Wheat	cytosol	70.09	68.81
HORVU7Hr1G074460.5	Barley	cytosol	67.99	66.74
TraesCS7D01G308200.1	Wheat	cytosol	70.33	66.74
Os08t0128300-01	Rice	cytosol	28.04	66.67
Zm00001d008652_P001	Maize	endoplasmic reticulum, plastid	33.18	61.47
VIT_06s0004g04570.t01	Wine grape	cytosol	34.81	39.63
VIT_08s0007g06520.t01	Wine grape	cytosol	34.35	38.99
VIT_12s0178g00200.t01	Wine grape	cytosol	34.35	38.99
VIT_13s0019g01240.t01	Wine grape	cytosol	34.35	38.99
VIT_11s0016g00770.t01	Wine grape	cytosol	33.41	38.03
VIT_14s0068g01630.t01	Wine grape	cytosol	31.31	34.45
VIT_04s0044g00580.t01	Wine grape	extracellular	34.35	31.96
VIT_13s0064g00730.t01	Wine grape	cytosol	23.83	28.25
VIT_00s0214g00170.t01	Wine grape	cytosol	11.45	28.0
VIT_11s0016g05490.t01	Wine grape	cytosol	25.0	24.71
VIT_17s0000g04010.t01	Wine grape	mitochondrion	22.9	22.17

Protein Annotations

EntrezGene:100259418	wikigene:100259418	MapMan:20.2.2.1.2	Gene3D:3.30.420.40	Gene3D:3.90.640.10	InterPro:Actin
InterPro:Arp3	ProteinID:CCB44014	ProteinID:CCB44014.1	UniProt:F6GVJ5	EMBL:FN594954	GO:GO:0000166
GO:GO:0000902	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005856	GO:GO:0005885	GO:GO:0007015
GO:GO:0008150	GO:GO:0009653	GO:GO:0009825	GO:GO:0009987	GO:GO:0010090	GO:GO:0016043
GO:GO:0016049	GO:GO:0030154	GO:GO:0034314	GO:GO:0040007	EntrezGene:LOC100259418	wikigene:LOC100259418
PFAM:PF00022	PANTHER:PTHR11937	PANTHER:PTHR11937:SF258	SMART:SM00268	SUPFAM:SSF53067	UniParc:UPI00015C904D
ArrayExpress:VIT_01s0137g00280	EnsemblPlantsGene:VIT_01s0137g00280	EnsemblPlants:VIT_01s0137g00280.t01	unigene:Vvi.18705	RefSeq:XP_002285370	RefSeq:XP_002285370.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:-:6782654..6810401

Molecular Weight (calculated)

47662.5 Da

IEP (calculated)

5.831

GRAVY (calculated)

-0.217

Length

428 amino acids

Sequence
(BLAST)

001: MDSAASRPAV VIDNGTGYTK MGFAGNVEPC FIAPTVVAVN ESFLNQNRSS TKGNWLAQHS AGVMADLDFF IGDEAIARSR NSSTYNLSYP IVHGQVDNWD
101: AMERFWQQCI FNYLRCDPED HYFLLTESPL TAPESREYTG EIMFETFNVP GLYIAVQPVL ALAAGYTTSK CEMTGVVVDV GDGATHVVPV ADGYVIGSSI
201: KSIPIAGKDV TLFVQQLMRE RGEHVPPEDS FEVARKVKEM YCYTSSDIVK EFNKHDKEPG KYIKHWRGIK PKTGAPYSCD VGYERFLGPE IFFNPEIYSS
301: DFATPLPAVI DKCIQSAPID TRRALYKNIV LSGGSTMFKD FHRRLQRDVK KIVDARVLAS DSRLDGEVKS QPVEVNVVSH PIQRYAVWFG GSVLASTPEF
401: FAACHTKAEY EEYGASICRT NPVFKGMY

Best Arabidopsis Sequence Match ( AT1G13180.1 )
(BLAST)

001: MDPTSRPAIV IDNGTGYTKM GFAGNVEPCF ILPTVVAVNE SFLNQSKSSS KATWQTQHNA GVAADLDFYI GDEALAKSRS SSTHNLHYPI EHGQVEDWDA
101: MERYWQQCIF NYLRCDPEDH YFLLTESPLT PPESREYTGE ILFETFNVPG LYIAVNSVLA LAAGYTTSKC EMTGVVVDVG DGATHVVPVA EGYVIGSCIK
201: SIPIAGKDVT LFIQQLMRER GENIPPEDSF DVARKVKEMY CYTCSDIVKE FNKHDKEPAK YIKQWKGVKP KTGAPYTCDV GYERFLGPEV FFNPEIYSND
301: FTTTLPAVID KCIQSAPIDT RRALYKNIVL SGGSTMFKDF GRRLQRDLKK IVDARVLANN ARTGGEITSQ PVEVNVVSHP VQRFAVWFGG SVLSSTPEFF
401: ASCRTKEEYE EYGASICRTN PVFKGMY

Arabidopsis Description

ARP3Actin-related protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAF1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.