Factsheet for VIT_00s0211g00050.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0211g00050.t01
VIT_01s0137g00280.t01
VIT_05s0029g00640.t01
VIT_08s0058g00770.t01
VIT_08s0058g00780.t01
VIT_16s0098g01720.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G22640.1	VIT_01s0137g00280.t01	AT1G13180.1	17267444
AT2G22640.1	VIT_08s0058g00770.t01	AT1G29170.1	15534215
AT2G22640.1	VIT_08s0058g00770.t01	AT1G29170.1	17267444
AT2G22640.1	VIT_00s0211g00050.t01	AT2G22640.1	17267444
AT2G22640.1	VIT_00s0211g00050.t01	AT2G22640.1	21798944
AT2G22640.1	VIT_00s0211g00050.t01	AT2G22640.1	25262777
AT2G22640.1	VIT_08s0058g00780.t01	AT2G38440.1	16043432
AT2G22640.1	VIT_08s0058g00780.t01	AT2G38440.1	17267444
AT2G22640.1	VIT_05s0029g00640.t01	AT3G23910.1	21798944
AT2G22640.1	VIT_16s0098g01720.t01	AT3G49290.1	17267444
AT2G22640.1	VIT_16s0098g01720.t01	AT5G24310.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039922.1-P	Field mustard	cytosol	55.56	58.82
KRH74448	Soybean	cytosol	79.63	50.59
KRH39504	Soybean	cytosol	77.78	49.41
CDY13739	Canola	cytosol	70.37	47.5
AT2G22640.1	Thale cress	cytosol	72.22	45.88
Bra030221.1-P	Field mustard	cytosol	72.22	45.35
CDX89497	Canola	cytosol	72.22	45.35
CDY25614	Canola	cytosol	72.22	45.35
PGSC0003DMT400043032	Potato	cytosol	70.37	44.71
GSMUA_Achr4P11860_001	Banana	cytosol	68.52	44.05
GSMUA_Achr9P23800_001	Banana	cytosol	68.52	44.05
Solyc03g043720.2.1	Tomato	cytosol	70.37	40.0
EES07816	Sorghum	cytosol	61.11	39.29
Os02t0829900-01	Rice	cytosol	61.11	38.37
TraesCS2D01G204600.1	Wheat	cytosol	61.11	37.5
TraesCS2B01G224200.1	Wheat	cytosol	61.11	37.5
TraesCS2A01G196600.1	Wheat	cytosol	61.11	37.5
HORVU2Hr1G062760.2	Barley	cytosol	59.26	36.78

Protein Annotations

Gene3D:1.20.5.110	MapMan:20.2.2.2.3	InterPro:BRICK1	ProteinID:CCB50021	ProteinID:CCB50021.1	UniProt:F6HCS6
EMBL:FN595522	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0007015	GO:GO:0008064	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0031209	GO:GO:0032403	GO:GO:0044877	GO:GO:0048870	PFAM:PD593487
PANTHER:PTHR33668	UniParc:UPI0002109887	ArrayExpress:VIT_00s0211g00050	EnsemblPlantsGene:VIT_00s0211g00050	EnsemblPlants:VIT_00s0211g00050.t01	unigene:Vvi.21988

Description

No Description!

Coordinates

chrUn:-:12824108..12825400

Molecular Weight (calculated)

6321.6 Da

IEP (calculated)

9.345

GRAVY (calculated)

0.057

Length

54 amino acids

Sequence
(BLAST)

1: MARAGGITNA VNVGIAVQAD WENREFISHI SLNIRRLFEF LVQFVVRNDQ WVRY

Best Arabidopsis Sequence Match ( AT2G22640.1 )
(BLAST)

1: MAKAGGITNA VNVGIAVQAD WENREFISHI SLNVRRLFEF LVQFESTTKS KLASLNEKLD LLERRLEMLE VQVSTATANP SLFAT

Arabidopsis Description

BRK1Protein BRICK 1 [Source:UniProtKB/Swiss-Prot;Acc:Q94JY4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.