Factsheet for VIT_16s0098g01720.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 3
mitochondrion 2
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0211g00050.t01
VIT_01s0011g01630.t01
VIT_01s0137g00280.t01
VIT_08s0058g00770.t01
VIT_08s0058g00780.t01
VIT_11s0016g00100.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49290.1	VIT_01s0137g00280.t01	AT1G13180.1	17267444
AT3G49290.1	VIT_08s0058g00770.t01	AT1G29170.1	17267444
AT3G49290.1	VIT_00s0211g00050.t01	AT2G22640.1	17267444
AT3G49290.1	VIT_01s0011g01630.t01	AT2G35110.1	17267444
AT3G49290.1	VIT_08s0058g00780.t01	AT2G38440.1	17267444
AT3G49290.1	VIT_11s0016g00100.t01	AT4G16340.1	17267444
AT3G49290.1	VIT_08s0058g00770.t01	AT4G18600.1	17267444
AT5G24310.1	VIT_08s0058g00770.t01	AT1G29170.1	17267444
AT5G24310.1	VIT_00s0211g00050.t01	AT2G22640.1	17267444
AT5G24310.1	VIT_11s0016g00100.t01	AT4G16340.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64414	Soybean	nucleus	65.04	73.85
PGSC0003DMT400047722	Potato	nucleus	61.52	71.84
KRH65850	Soybean	nucleus	62.06	70.68
Solyc03g083030.2.1	Tomato	nucleus	61.79	70.15
AT3G49290.1	Thale cress	nucleus	58.81	69.55
Bra017996.1-P	Field mustard	nucleus	58.27	67.82
CDY08121	Canola	nucleus	58.27	67.82
CDY05919	Canola	nucleus	57.45	67.3
AT5G24310.1	Thale cress	nucleus	57.99	66.67
CDX88092	Canola	nucleus	57.45	66.04
Bra009748.1-P	Field mustard	nucleus	57.45	65.84
KRH53518	Soybean	endoplasmic reticulum, golgi	65.04	65.4
CDX80429	Canola	nucleus	57.18	64.92
GSMUA_Achr5P09600_001	Banana	nucleus	26.83	55.31
KRH65551	Soybean	cytosol, endoplasmic reticulum, extracellular	23.85	53.99
GSMUA_Achr1P28080_001	Banana	cytosol	42.82	48.62
VIT_02s0025g02020.t01	Wine grape	nucleus	40.38	47.91
VIT_15s0046g01640.t01	Wine grape	cytosol	24.12	29.47
VIT_11s0016g03710.t01	Wine grape	nucleus	14.91	19.23

Protein Annotations

ArrayExpress:VIT_16s0098g01720	EMBL:FN595247	EnsemblPlants:VIT_16s0098g01720.t01	EnsemblPlantsGene:VIT_16s0098g01720	EntrezGene:100245321	EntrezGene:LOC100245321
InterPro:ABI	PANTHER:PTHR10460	PANTHER:PTHR10460:SF10	PFscan:PS51257	ProteinID:CCB48053	ProteinID:CCB48053.1
RefSeq:XP_002277097	RefSeq:XP_002277097.1	SEG:seg	TIGR:TC64797	unigene:Vvi.14119	UniParc:UPI000210A0AF
UniProt:F6H798	wikigene:100245321	wikigene:LOC100245321	MapMan:20.2.2.2.5	:	:

Description

No Description!

Coordinates

chr16:-:21814484..21818399

Molecular Weight (calculated)

42211.9 Da

IEP (calculated)

9.232

GRAVY (calculated)

-0.739

Length

369 amino acids

Sequence
(BLAST)

001: MLRIPLTYQR AHLDVVPTLS FLALACLHIY HNSPKFLLSG FEDKENSSQA QIFSSMETMT SSSLPLPREA STYDEVSMEQ SLLFSDSLKD LKNLRSQLYS
101: AAEYFELSYT NDDQKQIVME TLKEYAIKAL VNTVDHLGSV TYKVNDLLDE KVDEVSGTEL RVSCIEQRLR TCHEYMDHEG VSQQSLVIDT PKYHKRYILP
201: VGETMNGGRT KSKYQGRSLD DEDDWHQFRN AVRATIIDTP SSSFRKGNSP SPSPRLSRPA TFSFTGTMPR KDLEKRAVSP HRFPLLRSGS VSSRPTTPNS
301: SRPTTPNTAA ARRYPSEPRK SASMRLHPER ENPKDMEQYP SKSKRLLKAL LSRRKSKKDE MLYTYLDEY

Best Arabidopsis Sequence Match ( AT3G49290.1 )
(BLAST)

001: MPASHEASNY DEVSMQQSML FSDGLQDLKN LRAQLYSAAE YFELSYTTDD KKQIVVETLK DYAVKALVNT VDHLGSVTYK VNDFIDEKVD EVSETELRVS
101: CIEQRLRMCQ EYMDHEGRSQ QSLVIDTPKF HKRYILPAGE IMTATNLEKL KYFGSSLEDA DDWNQFRNAV RATIRETPPP PVRKSTSQSS SPRQPPQRSA
201: TFSFTSTIPK KEQDKRSVSP HRFPLLRSGS VATRKSASIS RPTTPSKSRS ITPIRYPSEP RRSASVRVAF EKDNQKETEQ QQPSKSKRLL KALLSRRKTK
301: KDDTLYTFLD EY

Arabidopsis Description

ABIL2At3g49290 [Source:UniProtKB/TrEMBL;Acc:Q147L2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.