CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX78876
CDX84262
CDX89497
CDX90172
CDX91460
CDX98005
CDX99451
CDY13739
CDY19392
CDY21087
CDY25614
CDY31664
CDY32235
CDY34451
CDY34585
CDY43322
CDY69042

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49290.1	CDX98005	AT1G13180.1	17267444
AT3G49290.1	CDY19392	AT1G13180.1	17267444
AT3G49290.1	CDY21087	AT1G13180.1	17267444
AT3G49290.1	CDY34585	AT1G13180.1	17267444
AT3G49290.1	CDX90172	AT1G29170.1	17267444
AT3G49290.1	CDY43322	AT1G29170.1	17267444
AT3G49290.1	CDX89497	AT2G22640.1	17267444
AT3G49290.1	CDY13739	AT2G22640.1	17267444
AT3G49290.1	CDY25614	AT2G22640.1	17267444
AT3G49290.1	CDX84262	AT2G35110.1	17267444
AT3G49290.1	CDY31664	AT2G35110.1	17267444
AT3G49290.1	CDX91460	AT2G38440.1	17267444
AT3G49290.1	CDY69042	AT2G38440.1	17267444
AT3G49290.1	CDY32235	AT4G16340.1	17267444
AT3G49290.1	CDY34451	AT4G16340.1	17267444
AT3G49290.1	CDX78876	AT4G18600.1	17267444
AT3G49290.1	CDX99451	AT4G18600.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017996.1-P	Field mustard	nucleus	99.05	98.42
CDY08121	Canola	nucleus	99.05	98.42
AT3G49290.1	Thale cress	nucleus	92.06	92.95
CDX88092	Canola	nucleus	77.78	76.32
CDX80429	Canola	nucleus	77.46	75.08
PGSC0003DMT400047722	Potato	nucleus	65.71	65.51
Solyc03g083030.2.1	Tomato	nucleus	65.71	63.69
KRH64414	Soybean	nucleus	65.08	63.08
KRH65850	Soybean	nucleus	63.49	61.73
CDX79218	Canola	cytosol	18.41	59.79
VIT_16s0098g01720.t01	Wine grape	extracellular	67.3	57.45
KRH53518	Soybean	endoplasmic reticulum, golgi	65.71	56.4
GSMUA_Achr5P09600_001	Banana	nucleus	27.62	48.6
KRH65551	Soybean	cytosol, endoplasmic reticulum, extracellular	25.08	48.47
GSMUA_Achr1P28080_001	Banana	cytosol	43.17	41.85
CDY57047	Canola	mitochondrion	14.6	38.33
CDY27664	Canola	nucleus	30.79	35.14
CDX67526	Canola	nucleus	31.75	34.84
CDY69736	Canola	nucleus	30.48	34.78
CDY13370	Canola	nucleus	28.57	34.22
CDY00780	Canola	plastid	20.0	26.92
CDY26141	Canola	cytosol	16.51	26.13
CDX79998	Canola	nucleus	25.08	26.07
CDY42020	Canola	nucleus	24.76	25.74
CDX83376	Canola	cytosol	23.49	24.1
CDY68381	Canola	cytosol	23.17	23.78
CDY61083	Canola	cytosol	11.75	22.29
CDY39460	Canola	cytosol	11.75	22.29
CDX99519	Canola	cytosol	13.02	21.24
CDY32903	Canola	cytosol	11.11	21.08
CDX86786	Canola	mitochondrion, plastid	10.16	13.39

Protein Annotations

EnsemblPlants:CDY05919	EnsemblPlantsGene:GSBRNA2T00121729001	InterPro:ABI	PANTHER:PTHR10460	PANTHER:PTHR10460:SF10	ProteinID:CDY05919
ProteinID:CDY05919.1	SEG:seg	UniParc:UPI0004EF3694	MapMan:20.2.2.2.5	:	:

Description

BnaC08g20960D

Coordinates

chrLK031966:+:541298..543588

Molecular Weight (calculated)

36246.6 Da

IEP (calculated)

9.704

GRAVY (calculated)

-0.917

Length

315 amino acids

Sequence
(BLAST)

001: MPESREASNY DEASMDQSML FSDGLKDLRN LRTQLYSAAE YFELSYTTDD KRQIVVETLK DYAVKALVNT VDHLGSITYK VNDFIDERVD EVAETELRVS
101: CIEQRLRMCQ EYMDHEGRSQ QSLVIETPKF HKRYILPAGE TIKTTNLDKL NYFGSSLEDA DDWNQFRNAV RATIRETPPP PPPVRKSTSQ ASSPRQPPQR
201: SATFSFTSTI PKKEQDKRSV SPHRFPLLRS GSVATRKSAS ISRPTTPSKS RSITPIRYPS EPRRSASVRV GFEKENQKET EQQQQPSKSK RLLKALLSRR
301: KTKKDDTLYT FLDEY

Best Arabidopsis Sequence Match ( AT3G49290.1 )
(BLAST)

001: MPASHEASNY DEVSMQQSML FSDGLQDLKN LRAQLYSAAE YFELSYTTDD KKQIVVETLK DYAVKALVNT VDHLGSVTYK VNDFIDEKVD EVSETELRVS
101: CIEQRLRMCQ EYMDHEGRSQ QSLVIDTPKF HKRYILPAGE IMTATNLEKL KYFGSSLEDA DDWNQFRNAV RATIRETPPP PVRKSTSQSS SPRQPPQRSA
201: TFSFTSTIPK KEQDKRSVSP HRFPLLRSGS VATRKSASIS RPTTPSKSRS ITPIRYPSEP RRSASVRVAF EKDNQKETEQ QQPSKSKRLL KALLSRRKTK
301: KDDTLYTFLD EY

Arabidopsis Description

ABIL2At3g49290 [Source:UniProtKB/TrEMBL;Acc:Q147L2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.