Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY39460 | Canola | cytosol | 90.36 | 90.36 |
| CDY32903 | Canola | cytosol | 87.35 | 87.35 |
| CDY26141 | Canola | cytosol | 87.35 | 72.86 |
| CDX99519 | Canola | cytosol | 77.11 | 66.32 |
| CDY57047 | Canola | mitochondrion | 29.52 | 40.83 |
| HORVU2Hr1G001180.6 | Barley | cytosol | 17.47 | 34.52 |
| GSMUA_Achr3P31930_001 | Banana | nucleus | 27.71 | 22.89 |
| GSMUA_Achr7P24740_001 | Banana | nucleus | 27.11 | 21.23 |
| CDX79218 | Canola | cytosol | 11.45 | 19.59 |
| CDX79998 | Canola | nucleus | 35.54 | 19.47 |
| CDY42020 | Canola | nucleus | 34.94 | 19.14 |
| CDX83376 | Canola | cytosol | 34.94 | 18.89 |
| CDY68381 | Canola | cytosol | 34.94 | 18.89 |
| GSMUA_Achr6P31890_001 | Banana | nucleus | 21.69 | 18.09 |
| AT2G46225.2 | Thale cress | nucleus | 35.54 | 17.93 |
| GSMUA_Achr3P15790_001 | Banana | nucleus | 25.9 | 17.2 |
| VIT_15s0046g01640.t01 | Wine grape | cytosol | 30.72 | 16.89 |
| EES03303 | Sorghum | nucleus | 29.52 | 16.61 |
| GSMUA_Achr9P05390_001 | Banana | cytosol, nucleus, plastid | 25.9 | 16.17 |
| Solyc01g095280.2.1 | Tomato | nucleus | 29.52 | 16.07 |
| TraesCS1D01G433300.1 | Wheat | nucleus | 28.31 | 15.82 |
| TraesCS3D01G228600.1 | Wheat | cytosol | 28.31 | 15.56 |
| Os05t0585400-01 | Rice | cytosol, mitochondrion, nucleus | 28.31 | 15.56 |
| TraesCS1A01G424300.1 | Wheat | nucleus | 28.31 | 15.51 |
| TraesCS3B01G254600.1 | Wheat | cytosol | 28.31 | 15.41 |
| TraesCS3A01G225000.2 | Wheat | cytosol, plastid | 28.31 | 15.41 |
| TraesCS1B01G456600.1 | Wheat | nucleus | 28.31 | 15.41 |
| Os01t0622700-01 | Rice | plasma membrane | 28.31 | 15.36 |
| KXG22631 | Sorghum | cytosol | 27.11 | 15.15 |
| KRH48004 | Soybean | nucleus | 28.31 | 15.11 |
| PGSC0003DMT400000237 | Potato | cytosol | 29.52 | 14.94 |
| KRH06553 | Soybean | nucleus | 27.71 | 14.79 |
| Zm00001d009707_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 26.51 | 14.77 |
| KRH68849 | Soybean | cytosol | 25.3 | 14.19 |
| HORVU1Hr1G092730.1 | Barley | plastid | 28.31 | 13.54 |
| KRG97096 | Soybean | cytosol | 24.1 | 13.29 |
| CDY05919 | Canola | nucleus | 22.29 | 11.75 |
| CDY08121 | Canola | nucleus | 22.29 | 11.67 |
| CDY69736 | Canola | nucleus | 19.28 | 11.59 |
| CDY27664 | Canola | nucleus | 18.67 | 11.23 |
| CDY13370 | Canola | nucleus | 17.47 | 11.03 |
| CDX88092 | Canola | nucleus | 21.08 | 10.9 |
| CDX80429 | Canola | nucleus | 21.08 | 10.77 |
| Zm00001d044184_P001 | Maize | plastid | 27.11 | 10.77 |
| CDX67526 | Canola | nucleus | 18.07 | 10.45 |
| CDY00780 | Canola | plastid | 14.46 | 10.26 |
| CDX86786 | Canola | mitochondrion, plastid | 12.65 | 8.79 |
Protein Annotations
| EnsemblPlants:CDY61083 | EnsemblPlantsGene:GSBRNA2T00030523001 | GO:A0A078JA74 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:ABI | PANTHER:PTHR10460 | PANTHER:PTHR10460:SF14 | PFAM:PF02238 | ProteinID:CDY61083 | ProteinID:CDY61083.1 |
| TMHMM:TMhelix | UniParc:UPI0004EE5FF9 | UniProt:A0A078JA74 | MapMan:20.2.2.2.5 | : | : |
Description
BnaC06g41120DBnaC06g41120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JA74]
Coordinates
chrLK033954:+:22123..23317
Molecular Weight (calculated)
19123.3 Da
IEP (calculated)
4.780
GRAVY (calculated)
0.123
Length
166 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMESSKVHE DTDQKTDPVL DNLKDYTVKA LVNVVDHLGT VASKLTNLFD QQSSDISTME LRTSCVSQQL LTCRTLLVLS DDLNQDRIIA MRQKWRLCEI
101: DLEDYFFVLL TRLFQSIQRH IYLKGPMDKV TSVAIPLALA ASSLYMINCV FMLFHVFLES VMFFTE
101: DLEDYFFVLL TRLFQSIQRH IYLKGPMDKV TSVAIPLALA ASSLYMINCV FMLFHVFLES VMFFTE
001: METEISGMDN PAMTLDEVSM ERNKSFVKAL QELKNLRPQL YSAADYCEKS YLHSEQKQMV LDNLKDYTVK ALVNAVDHLG TVASKLTDLF DHQNSDISTM
101: EMRASCVSQQ LLTCRTYIDK EGLRQQQLLA VIPLHHKHYI LPNSVNKRVH FSPLRRTDTR QNHYQAISRL QPSGSETKST LKGTSTVAPS SKDSKAFSKT
201: SGVFHLLGDD ENIANKKPLA GSQVSGVPAA STAHKDLEVP KLLTAHRSLD NNPRREIIQA PVRTKSVLSA FFVKQKTPKL KAGYVS
101: EMRASCVSQQ LLTCRTYIDK EGLRQQQLLA VIPLHHKHYI LPNSVNKRVH FSPLRRTDTR QNHYQAISRL QPSGSETKST LKGTSTVAPS SKDSKAFSKT
201: SGVFHLLGDD ENIANKKPLA GSQVSGVPAA STAHKDLEVP KLLTAHRSLD NNPRREIIQA PVRTKSVLSA FFVKQKTPKL KAGYVS
Arabidopsis Description
ABIL1ABI-1-like 1 [Source:UniProtKB/TrEMBL;Acc:B3H5V3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.