Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY61083 | Canola | cytosol | 87.35 | 87.35 |
| CDY39460 | Canola | cytosol | 83.13 | 83.13 |
| CDY26141 | Canola | cytosol | 86.75 | 72.36 |
| CDX99519 | Canola | cytosol | 67.47 | 58.03 |
| CDY57047 | Canola | mitochondrion | 30.12 | 41.67 |
| HORVU2Hr1G001180.6 | Barley | cytosol | 17.47 | 34.52 |
| GSMUA_Achr3P31930_001 | Banana | nucleus | 28.31 | 23.38 |
| GSMUA_Achr7P24740_001 | Banana | nucleus | 28.31 | 22.17 |
| CDX79998 | Canola | nucleus | 35.54 | 19.47 |
| CDY42020 | Canola | nucleus | 34.94 | 19.14 |
| GSMUA_Achr6P31890_001 | Banana | nucleus | 22.89 | 19.1 |
| CDX83376 | Canola | cytosol | 34.94 | 18.89 |
| CDY68381 | Canola | cytosol | 34.94 | 18.89 |
| VIT_15s0046g01640.t01 | Wine grape | cytosol | 33.13 | 18.21 |
| AT2G46225.2 | Thale cress | nucleus | 35.54 | 17.93 |
| GSMUA_Achr3P15790_001 | Banana | nucleus | 26.51 | 17.6 |
| CDX79218 | Canola | cytosol | 10.24 | 17.53 |
| Solyc01g095280.2.1 | Tomato | nucleus | 30.72 | 16.72 |
| EES03303 | Sorghum | nucleus | 29.52 | 16.61 |
| KRH48004 | Soybean | nucleus | 30.72 | 16.4 |
| GSMUA_Achr9P05390_001 | Banana | cytosol, nucleus, plastid | 25.9 | 16.17 |
| KRH06553 | Soybean | nucleus | 30.12 | 16.08 |
| TraesCS1D01G433300.1 | Wheat | nucleus | 28.31 | 15.82 |
| TraesCS3D01G228600.1 | Wheat | cytosol | 28.31 | 15.56 |
| PGSC0003DMT400000237 | Potato | cytosol | 30.72 | 15.55 |
| TraesCS1A01G424300.1 | Wheat | nucleus | 28.31 | 15.51 |
| TraesCS1B01G456600.1 | Wheat | nucleus | 28.31 | 15.41 |
| TraesCS3A01G225000.2 | Wheat | cytosol, plastid | 28.31 | 15.41 |
| TraesCS3B01G254600.1 | Wheat | cytosol | 28.31 | 15.41 |
| Os01t0622700-01 | Rice | plasma membrane | 28.31 | 15.36 |
| Os05t0585400-01 | Rice | cytosol, mitochondrion, nucleus | 27.71 | 15.23 |
| KRH68849 | Soybean | cytosol | 26.51 | 14.86 |
| KXG22631 | Sorghum | cytosol | 26.51 | 14.81 |
| Zm00001d009707_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 25.9 | 14.43 |
| KRG97096 | Soybean | cytosol | 25.3 | 13.95 |
| HORVU1Hr1G092730.1 | Barley | plastid | 28.31 | 13.54 |
| CDY69736 | Canola | nucleus | 20.48 | 12.32 |
| CDY13370 | Canola | nucleus | 19.28 | 12.17 |
| CDY27664 | Canola | nucleus | 19.88 | 11.96 |
| CDX67526 | Canola | nucleus | 19.28 | 11.15 |
| CDY05919 | Canola | nucleus | 21.08 | 11.11 |
| CDY08121 | Canola | nucleus | 21.08 | 11.04 |
| Zm00001d044184_P001 | Maize | plastid | 27.11 | 10.77 |
| CDX88092 | Canola | nucleus | 19.88 | 10.28 |
| CDX80429 | Canola | nucleus | 19.88 | 10.15 |
| CDY00780 | Canola | plastid | 13.86 | 9.83 |
| CDX86786 | Canola | mitochondrion, plastid | 12.65 | 8.79 |
Protein Annotations
| EnsemblPlants:CDY32903 | EnsemblPlantsGene:GSBRNA2T00053059001 | GO:A0A078H7N9 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:ABI | PANTHER:PTHR10460 | PANTHER:PTHR10460:SF14 | PFAM:PF02238 | ProteinID:CDY32903 | ProteinID:CDY32903.1 |
| TMHMM:TMhelix | UniParc:UPI0004EE473A | UniProt:A0A078H7N9 | MapMan:20.2.2.2.5 | : | : |
Description
BnaC02g11870DBnaC02g11870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H7N9]
Coordinates
chrLK032302:+:80950..82145
Molecular Weight (calculated)
19124.4 Da
IEP (calculated)
4.783
GRAVY (calculated)
0.164
Length
166 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMESLKVHE DTDQKTDPVL DNLKDYNVKA LVNVVDHLGT VASKLTNLLD QQSSDISTME LRASCVSQKL LTCRTLLVLS DDLNQDRIIA MRQKWRLCEI
101: DLEDYFFVLL TRLFQSIQRH IYLKGPMDKV TSVAIPLALA ASSLYMINCV FMLFYVFLES VMFFTE
101: DLEDYFFVLL TRLFQSIQRH IYLKGPMDKV TSVAIPLALA ASSLYMINCV FMLFYVFLES VMFFTE
001: METEISGMDN PAMTLDEVSM ERNKSFVKAL QELKNLRPQL YSAADYCEKS YLHSEQKQMV LDNLKDYTVK ALVNAVDHLG TVASKLTDLF DHQNSDISTM
101: EMRASCVSQQ LLTCRTYIDK EGLRQQQLLA VIPLHHKHYI LPNSVNKRVH FSPLRRTDTR QNHYQAISRL QPSGSETKST LKGTSTVAPS SKDSKAFSKT
201: SGVFHLLGDD ENIANKKPLA GSQVSGVPAA STAHKDLEVP KLLTAHRSLD NNPRREIIQA PVRTKSVLSA FFVKQKTPKL KAGYVS
101: EMRASCVSQQ LLTCRTYIDK EGLRQQQLLA VIPLHHKHYI LPNSVNKRVH FSPLRRTDTR QNHYQAISRL QPSGSETKST LKGTSTVAPS SKDSKAFSKT
201: SGVFHLLGDD ENIANKKPLA GSQVSGVPAA STAHKDLEVP KLLTAHRSLD NNPRREIIQA PVRTKSVLSA FFVKQKTPKL KAGYVS
Arabidopsis Description
ABIL1ABI-1-like 1 [Source:UniProtKB/TrEMBL;Acc:B3H5V3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.