CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67526	Canola	nucleus	85.17	78.05
CDY27664	Canola	nucleus	72.24	68.84
CDY69736	Canola	nucleus	71.48	68.12
AT5G42030.2	Thale cress	cytosol	58.56	47.83
CDX79218	Canola	cytosol	14.45	39.18
GSMUA_Achr10P...	Banana	cytosol	21.67	38.0
CDY57047	Canola	mitochondrion	17.11	37.5
GSMUA_Achr7P14650_001	Banana	nucleus	20.53	30.86
VIT_02s0025g02020.t01	Wine grape	nucleus	34.6	29.26
CDY05919	Canola	nucleus	34.22	28.57
CDY08121	Canola	nucleus	34.22	28.39
PGSC0003DMT400031954	Potato	nucleus	36.12	28.36
CDX88092	Canola	nucleus	34.22	28.04
CDX80429	Canola	nucleus	33.84	27.38
Solyc08g082710.2.1	Tomato	nucleus	34.6	27.33
CDY26141	Canola	cytosol	17.87	23.62
TraesCS3A01G159500.1	Wheat	nucleus	25.86	21.45
EES02170	Sorghum	nucleus	25.86	21.18
HORVU3Hr1G032200.1	Barley	nucleus	25.48	21.14
Os01t0236400-01	Rice	nucleus	25.48	21.14
TraesCS3D01G166800.1	Wheat	nucleus	25.48	21.14
TraesCS3B01G190200.1	Wheat	nucleus	25.1	20.82
CDX79998	Canola	nucleus	22.81	19.8
CDY42020	Canola	nucleus	22.43	19.47
CDY32903	Canola	cytosol	12.17	19.28
CDY68381	Canola	cytosol	22.43	19.22
CDX83376	Canola	cytosol	22.05	18.89
GSMUA_Achr8P19680_001	Banana	nucleus	21.29	17.61
CDY61083	Canola	cytosol	11.03	17.47
CDY39460	Canola	cytosol	11.03	17.47
CDY00780	Canola	plastid	14.83	16.67
CDX99519	Canola	cytosol	11.03	15.03
CDX86786	Canola	mitochondrion, plastid	7.6	8.37

Protein Annotations

EnsemblPlants:CDY13370	EnsemblPlantsGene:GSBRNA2T00071394001	InterPro:ABI	PANTHER:PTHR10460	PANTHER:PTHR10460:SF10	ProteinID:CDY13370
ProteinID:CDY13370.1	SEG:seg	UniParc:UPI0004EEFC9E	UniProt:A0A078FG21	MapMan:20.2.2.2.5	:

Description

BnaC06g13870DBnaC06g13870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FG21]

Coordinates

chrLK032034:+:703954..705964

Molecular Weight (calculated)

29736.3 Da

IEP (calculated)

10.785

GRAVY (calculated)

-0.784

Length

263 amino acids

Sequence
(BLAST)

001: MESSTSLAID LKNLRKQLYS AAEYFETSYG KEEHKETVIE TLKEYAAKAV VNTVDHLGSV SDKFNSFLSD DSAHFSTTHL RLSSLEQRMK LCREYMGKSG
101: TSQHFFLIQS PPRHHKRYFF PQHGRGERGR GTSFSAGDDS HRFKNAVRST ILENHPITTA RKAYKTGSFS FLHNNNISNN RTPNSERGNS PKRFPLLRSG
201: SQLKHSSSPG QPRILALLPE PERAISLSTS REIVEIKQKS SLRKGKKSLM LKALMSMSSK SRN

Best Arabidopsis Sequence Match ( AT5G42030.1 )
(BLAST)

001: MASSTSLAIV LHQSSNHDEL FMKQTLQFSE TLKDLKNLRK QLYSAAEYFE TSYGKAEHKE TVIETLKEYA AKAVVNTVDH LGSVSDKFNS FLSDNSTHFS
101: TTHLRLSSLE QRMRLCRDYM GKSGTHQHLL LFQYPRHHKR YFFPQQGRGT SFSAGDDSHR FTSAVRSTIL ENLPNTARKA NKTGSFSFAP IVHNNINNRT
201: PNKRSNSPMR FPLLRSGSLL KRSSSPSQPK KPPLALPEPQ RAISVSRNTE IVEIKQSSSR KGKKILMFKA LMSMSKSRN

Arabidopsis Description

ABIL4ABL interactor-like protein 4 [Source:TAIR;Acc:AT5G42030]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.