Factsheet for VIT_02s0025g02020.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	23.79	49.33
VIT_16s0098g01720.t01	Wine grape	extracellular	47.91	40.38
GSMUA_Achr7P14650_001	Banana	nucleus	21.54	38.29
Bra025451.1-P	Field mustard	nucleus	32.8	36.96
CDY27664	Canola	nucleus	32.8	36.96
CDY69736	Canola	nucleus	32.15	36.23
CDX67526	Canola	nucleus	32.15	34.84
Bra028522.1-P	Field mustard	nucleus	32.15	34.84
CDY13370	Canola	nucleus	29.26	34.6
Solyc08g082710.2.1	Tomato	nucleus	36.01	33.63
PGSC0003DMT400031954	Potato	nucleus	35.69	33.13
AT5G42030.2	Thale cress	cytosol	32.15	31.06
TraesCS3A01G159500.1	Wheat	nucleus	28.62	28.08
TraesCS3B01G190200.1	Wheat	nucleus	28.62	28.08
HORVU3Hr1G032200.1	Barley	nucleus	28.3	27.76
Os01t0236400-01	Rice	nucleus	28.3	27.76
TraesCS3D01G166800.1	Wheat	nucleus	28.3	27.76
EES02170	Sorghum	nucleus	27.01	26.17
VIT_15s0046g01640.t01	Wine grape	cytosol	24.76	25.5
GSMUA_Achr8P19680_001	Banana	nucleus	24.12	23.58
VIT_11s0016g03710.t01	Wine grape	nucleus	16.08	17.48

Protein Annotations

ArrayExpress:VIT_02s0025g02020	EMBL:FN596251	EnsemblPlants:VIT_02s0025g02020.t01	EnsemblPlantsGene:VIT_02s0025g02020	EntrezGene:100249566	EntrezGene:LOC100249566
InterPro:ABI	PANTHER:PTHR10460	PANTHER:PTHR10460:SF10	ProteinID:CCB58272	ProteinID:CCB58272.1	RefSeq:XP_002264080
RefSeq:XP_002264080.2	SEG:seg	unigene:Vvi.5318	UniParc:UPI0001982D7E	UniProt:F6HU49	wikigene:100249566
wikigene:LOC100249566	MapMan:20.2.2.2.5	:	:	:	:

Description

No Description!

Coordinates

chr2:+:1827664..1830348

Molecular Weight (calculated)

35500.8 Da

IEP (calculated)

9.923

GRAVY (calculated)

-0.802

Length

311 amino acids

Sequence
(BLAST)

001: MESVASSSSV AHQEPSNYDE YSMQQSLLFG DSLKDLKSLR KQLYSAAEYF EQCYHKDDQK QIVLETLKDY AIKALVNTVD HLGSVTYKVN TFLDDKIGEV
101: HGTELQFSCI EQRIRTCREF INRSGFCQQS LLMRTPKHHK RYTFPGGETT NTTGHTIPTY QTCSPYAEGD LHQFYKGGLA TAWEMPSSMM ARRGHSARPS
201: PQSSPRPRAF PFNITRISSS KERDKRAVSP NYFPLIRSGS VASRSTSPNS SKAKLRTSSE PRSASLFTRT ERERAKDIEQ QTSQSKRLFK ALISMRKPKK
301: DVTLYRYLDE N

Best Arabidopsis Sequence Match ( AT3G49290.1 )
(BLAST)

001: MPASHEASNY DEVSMQQSML FSDGLQDLKN LRAQLYSAAE YFELSYTTDD KKQIVVETLK DYAVKALVNT VDHLGSVTYK VNDFIDEKVD EVSETELRVS
101: CIEQRLRMCQ EYMDHEGRSQ QSLVIDTPKF HKRYILPAGE IMTATNLEKL KYFGSSLEDA DDWNQFRNAV RATIRETPPP PVRKSTSQSS SPRQPPQRSA
201: TFSFTSTIPK KEQDKRSVSP HRFPLLRSGS VATRKSASIS RPTTPSKSRS ITPIRYPSEP RRSASVRVAF EKDNQKETEQ QQPSKSKRLL KALLSRRKTK
301: KDDTLYTFLD EY

Arabidopsis Description

ABIL2At3g49290 [Source:UniProtKB/TrEMBL;Acc:Q147L2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.