CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27664	Canola	nucleus	96.01	96.01
CDY13370	Canola	nucleus	68.12	71.48
CDX67526	Canola	nucleus	74.28	71.43
AT5G42030.2	Thale cress	cytosol	69.2	59.32
CDX79218	Canola	cytosol	17.03	48.45
GSMUA_Achr10P...	Banana	cytosol	22.1	40.67
CDY57047	Canola	mitochondrion	17.03	39.17
PGSC0003DMT400031954	Potato	nucleus	39.13	32.24
VIT_02s0025g02020.t01	Wine grape	nucleus	36.23	32.15
GSMUA_Achr7P14650_001	Banana	nucleus	20.29	32.0
Solyc08g082710.2.1	Tomato	nucleus	38.41	31.83
CDY05919	Canola	nucleus	34.78	30.48
CDY08121	Canola	nucleus	34.78	30.28
CDX88092	Canola	nucleus	35.14	30.22
CDX80429	Canola	nucleus	35.14	29.85
CDY26141	Canola	cytosol	17.39	24.12
TraesCS3D01G166800.1	Wheat	nucleus	26.81	23.34
TraesCS3B01G190200.1	Wheat	nucleus	26.81	23.34
TraesCS3A01G159500.1	Wheat	nucleus	26.81	23.34
HORVU3Hr1G032200.1	Barley	nucleus	26.81	23.34
Os01t0236400-01	Rice	nucleus	26.09	22.71
EES02170	Sorghum	nucleus	26.09	22.43
CDY32903	Canola	cytosol	12.32	20.48
CDY42020	Canola	nucleus	22.46	20.46
CDX79998	Canola	nucleus	22.46	20.46
CDY39460	Canola	cytosol	11.96	19.88
CDY61083	Canola	cytosol	11.59	19.28
CDX83376	Canola	cytosol	21.38	19.22
CDY68381	Canola	cytosol	21.01	18.89
GSMUA_Achr8P19680_001	Banana	nucleus	21.74	18.87
CDY00780	Canola	plastid	15.94	18.8
CDX99519	Canola	cytosol	11.23	16.06
CDX86786	Canola	mitochondrion, plastid	6.88	7.95

Protein Annotations

EnsemblPlants:CDY69736	EnsemblPlantsGene:GSBRNA2T00092116001	InterPro:ABI	PANTHER:PTHR10460	PANTHER:PTHR10460:SF10	ProteinID:CDY69736
ProteinID:CDY69736.1	SEG:seg	UniParc:UPI0003E5D595	UniProt:A0A078JW27	MapMan:20.2.2.2.5	:

Description

BnaCnng65090DBnaCnng65090D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JW27]

Coordinates

chrLK040200:-:775..2479

Molecular Weight (calculated)

31256.2 Da

IEP (calculated)

10.810

GRAVY (calculated)

-0.702

Length

276 amino acids

Sequence
(BLAST)

001: MESSTSLAIV LHQSSNHDEL FMQQTLQFSQ TLKDLKNLGK QLYSAAEYFE TSYGKEEHKE TVIETLKEYA AKALVNTVDH LGSVSDKFNS FLSDNSAHFS
101: TTRLRLSSLE QRMKLCREYM GKSGSSQHRF QVQSPHHHKR YFFPQHGRGT SFAAGDDSHR FKSAVRSTIL ENHPNNARKT NKTGSFSFLH NNISNITPSK
201: ITKSPMRFPL IRSGSLLKRS SSPSQPRLLA LPEPQRAISM STSREIVEIQ QKSSLRKGKK SLMLKALMSM SSKSRN

Best Arabidopsis Sequence Match ( AT5G42030.1 )
(BLAST)

001: MASSTSLAIV LHQSSNHDEL FMKQTLQFSE TLKDLKNLRK QLYSAAEYFE TSYGKAEHKE TVIETLKEYA AKAVVNTVDH LGSVSDKFNS FLSDNSTHFS
101: TTHLRLSSLE QRMRLCRDYM GKSGTHQHLL LFQYPRHHKR YFFPQQGRGT SFSAGDDSHR FTSAVRSTIL ENLPNTARKA NKTGSFSFAP IVHNNINNRT
201: PNKRSNSPMR FPLLRSGSLL KRSSSPSQPK KPPLALPEPQ RAISVSRNTE IVEIKQSSSR KGKKILMFKA LMSMSKSRN

Arabidopsis Description

ABIL4ABL interactor-like protein 4 [Source:TAIR;Acc:AT5G42030]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.