CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89497
CDX90172
CDY13739
CDY25614
CDY32235
CDY34451
CDY43322

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24310.1	CDX90172	AT1G29170.1	17267444
AT5G24310.1	CDY43322	AT1G29170.1	17267444
AT5G24310.1	CDX89497	AT2G22640.1	17267444
AT5G24310.1	CDY13739	AT2G22640.1	17267444
AT5G24310.1	CDY25614	AT2G22640.1	17267444
AT5G24310.1	CDY32235	AT4G16340.1	17267444
AT5G24310.1	CDY34451	AT4G16340.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009748.1-P	Field mustard	nucleus	100.0	99.69
CDX80429	Canola	nucleus	98.75	97.54
AT5G24310.1	Thale cress	nucleus	82.87	82.87
CDY05919	Canola	nucleus	76.32	77.78
CDY08121	Canola	nucleus	76.64	77.6
CDX79218	Canola	cytosol	22.74	75.26
PGSC0003DMT400047722	Potato	nucleus	64.8	65.82
Solyc03g083030.2.1	Tomato	nucleus	65.73	64.92
KRH64414	Soybean	nucleus	64.17	63.38
KRH65850	Soybean	nucleus	61.68	61.11
VIT_16s0098g01720.t01	Wine grape	extracellular	66.04	57.45
KRH53518	Soybean	endoplasmic reticulum, golgi	65.42	57.22
GSMUA_Achr5P09600_001	Banana	nucleus	28.35	50.84
KRH65551	Soybean	cytosol, endoplasmic reticulum, extracellular	25.23	49.69
GSMUA_Achr1P28080_001	Banana	cytosol	43.61	43.08
CDY57047	Canola	mitochondrion	14.33	38.33
CDY27664	Canola	nucleus	30.53	35.51
CDY69736	Canola	nucleus	30.22	35.14
CDX67526	Canola	nucleus	30.84	34.49
CDY13370	Canola	nucleus	28.04	34.22
CDY00780	Canola	plastid	23.68	32.48
CDX79998	Canola	nucleus	25.23	26.73
CDY42020	Canola	nucleus	24.92	26.4
CDY26141	Canola	cytosol	16.2	26.13
CDX83376	Canola	cytosol	23.36	24.43
CDY68381	Canola	cytosol	23.05	24.1
CDX99519	Canola	cytosol	12.77	21.24
CDY61083	Canola	cytosol	10.9	21.08
CDY39460	Canola	cytosol	10.9	21.08
CDY32903	Canola	cytosol	10.28	19.88
CDX86786	Canola	mitochondrion, plastid	9.97	13.39

Protein Annotations

EnsemblPlants:CDX88092	EnsemblPlantsGene:GSBRNA2T00147520001	InterPro:ABI	PANTHER:PTHR10460	PANTHER:PTHR10460:SF10	ProteinID:CDX88092
ProteinID:CDX88092.1	SEG:seg	UniParc:UPI0004EDC0F2	MapMan:20.2.2.2.5	:	:

Description

BnaA06g26830D

Coordinates

chrLK031854:+:553048..556019

Molecular Weight (calculated)

36500.3 Da

IEP (calculated)

10.201

GRAVY (calculated)

-0.823

Length

321 amino acids

Sequence
(BLAST)

001: MSAAATMHMP REGSNYDEIS MQQSLLFSDS LKDLKNLRTQ LYSAAEYFEL SYTNDGDTQS VVETLKDYAI KALVNTVDHL GSVTYKVNDF VDEKVDQVTG
101: TELRVACIEQ RLRMCQEYMD HEGRSQQSLV INTPKFHKRY ILPSGEIKKG GNLAKLKSVE SSIGEEADWN QFRNAVRTTI RETPPPLLRK PVLPSPPPQR
201: RTQRSATFSL SSISNTAPKK EQDKRAVSPH RFPLLRSGSV AIRPTSVSRP TTPSKSRTIT PKRYPSEPRR SASVRAAFEK EAQKEPEQQQ QPSKSKRLLK
301: ALLSRRKTKK DDTLYTYLDE Y

Best Arabidopsis Sequence Match ( AT5G24310.1 )
(BLAST)

001: MSAAATMPMP REASNYDEIS MQQSMLFSDS LKDLKNLRTQ LYSAAEYFEL SYTNDEQKQI VVETLKDYAI KALVNTVDHL GSVTYKVNDF VDEKVDEVAG
101: TELRVSCIEQ RLRMCQEYMD HEGRSQQSLV IDTPKFHKRY FLPSGEIKRG GNLAKLKNVE GSFDGEDDWN QFRNAVRATI RETPPPPVRK PILQSPSQRK
201: PQRSATFSFS SIATAPKKEQ DKRAVSPHRF PLLRSGSVAI RPSSISRPTT PSKSRAVTPT PKRYPSEPRR SASVRVAFEK EAQKEPEHQQ QPSKSKRLLK
301: ALLSRRKTKK DDTLYTYLDE Y

Arabidopsis Description

ABIL3Protein ABIL3 [Source:UniProtKB/Swiss-Prot;Acc:Q6NMC6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.