Factsheet for PGSC0003DMT400047722

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400027956
PGSC0003DMT400043032

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49290.1	PGSC0003DMT400027956	AT1G13180.1	17267444
AT3G49290.1	PGSC0003DMT400043032	AT2G22640.1	17267444
AT5G24310.1	PGSC0003DMT400043032	AT2G22640.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g083030.2.1	Tomato	nucleus	99.05	96.31
KRH64414	Soybean	nucleus	70.89	68.92
AT3G49290.1	Thale cress	nucleus	66.46	67.31
KRH65850	Soybean	nucleus	68.99	67.28
CDY05919	Canola	nucleus	65.51	65.71
Bra017996.1-P	Field mustard	nucleus	65.51	65.3
CDY08121	Canola	nucleus	65.51	65.3
CDX88092	Canola	nucleus	65.82	64.8
Bra009748.1-P	Field mustard	nucleus	65.82	64.6
AT5G24310.1	Thale cress	nucleus	65.19	64.17
CDX80429	Canola	nucleus	65.82	64.0
VIT_16s0098g01720.t01	Wine grape	extracellular	71.84	61.52
KRH53518	Soybean	endoplasmic reticulum, golgi	71.2	61.31
GSMUA_Achr5P09600_001	Banana	nucleus	31.01	54.75
KRH65551	Soybean	cytosol, endoplasmic reticulum, extracellular	26.27	50.92
GSMUA_Achr1P28080_001	Banana	cytosol	46.52	45.23
PGSC0003DMT400031954	Potato	nucleus	38.61	36.42
PGSC0003DMT400000237	Potato	cytosol	27.22	26.22
PGSC0003DMT400000827	Potato	nucleus	17.72	22.13

Protein Annotations

EnsemblPlants:PGSC0003DMT400047722	EnsemblPlantsGene:PGSC0003DMG400018548	InterPro:ABI	PANTHER:PTHR10460	PANTHER:PTHR10460:SF10	PGSC:PGSC0003DMG400018548
SEG:seg	UniParc:UPI00029552E6	UniProt:M1BLB5	MapMan:20.2.2.2.5	:	:

Description

Protein ABIL2 [Source:PGSC_GENE;Acc:PGSC0003DMG400018548]

Coordinates

chr3:-:48176385..48180933

Molecular Weight (calculated)

35957.3 Da

IEP (calculated)

9.608

GRAVY (calculated)

-0.871

Length

316 amino acids

Sequence
(BLAST)

001: MTFPREPANF DEVSMHQSML FSDSLKDLKN LRKQLYSAAE YFELSYSNDE QKDVVVDTLK EYAIKALVNT VDHLGSVTYK VSDLLDEKVD EVSGTELRIS
101: CIEQRLKTCQ EYIDNEGLSQ QSLVIHTPKY HKRYILPVGE TADGGNLTKL QYQGCSLDDQ DDWNQFRNAV RATIRETPPP AAGKGFSPSP TPRLLQQYGK
201: FSFSGTTPKK ELDKRTVSPH RFPLLRTASL ASRTTTPKSS RPTTPNKSRP TTPNPSNGRR YAAEPRKSAS MRLYADNINT KDPEQHSSKS KRLLKSLLSR
301: RKSKKDETLY TYIDEY

Best Arabidopsis Sequence Match ( AT5G24310.1 )
(BLAST)

001: MSAAATMPMP REASNYDEIS MQQSMLFSDS LKDLKNLRTQ LYSAAEYFEL SYTNDEQKQI VVETLKDYAI KALVNTVDHL GSVTYKVNDF VDEKVDEVAG
101: TELRVSCIEQ RLRMCQEYMD HEGRSQQSLV IDTPKFHKRY FLPSGEIKRG GNLAKLKNVE GSFDGEDDWN QFRNAVRATI RETPPPPVRK PILQSPSQRK
201: PQRSATFSFS SIATAPKKEQ DKRAVSPHRF PLLRSGSVAI RPSSISRPTT PSKSRAVTPT PKRYPSEPRR SASVRVAFEK EAQKEPEHQQ QPSKSKRLLK
301: ALLSRRKTKK DDTLYTYLDE Y

Arabidopsis Description

ABIL3Protein ABIL3 [Source:UniProtKB/Swiss-Prot;Acc:Q6NMC6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.