Factsheet for PGSC0003DMT400027956

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400043032
PGSC0003DMT400047722
PGSC0003DMT400052197

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13180.1	PGSC0003DMT400043032	AT2G22640.1	17267444
AT1G13180.1	PGSC0003DMT400052197	AT3G27000.1	17267444
AT1G13180.1	PGSC0003DMT400047722	AT3G49290.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g013940.2.1	Tomato	cytosol	98.38	98.83
VIT_01s0137g00280.t01	Wine grape	cytosol	91.42	92.06
KRH59228	Soybean	nucleus	86.54	87.15
Os02t0596900-01	Rice	cytosol	85.38	85.98
TraesCS6A01G211000.1	Wheat	cytosol	84.92	85.71
TraesCS6D01G194100.1	Wheat	cytosol	84.92	85.71
TraesCS6B01G240500.1	Wheat	cytosol	84.69	85.48
GSMUA_Achr6P21120_001	Banana	cytosol	84.45	85.25
AT1G13180.1	Thale cress	cytosol	84.22	85.01
GSMUA_Achr9P07630_001	Banana	cytosol	84.22	84.81
CDX98005	Canola	cytosol	83.29	84.07
Bra019815.1-P	Field mustard	cytosol	83.29	84.07
GSMUA_Achr2P05970_001	Banana	cytosol	34.34	83.62
CDY19392	Canola	cytosol	82.83	83.61
Bra016738.1-P	Field mustard	cytosol	82.6	83.37
CDY21087	Canola	cytosol	82.37	83.14
CDY34585	Canola	cytosol	82.13	82.9
Zm00001d017106_P001	Maize	cytosol	82.37	81.99
KXG30555	Sorghum	cytosol	81.67	81.29
HORVU6Hr1G053910.4	Barley	cytosol	82.6	80.54
KRH59222	Soybean	cytosol	34.34	77.08
Zm00001d050981_P001	Maize	cytosol	80.74	75.82
GSMUA_Achr2P05960_001	Banana	cytosol	53.13	74.84
GSMUA_Achr8P01270_001	Banana	cytosol	72.16	72.83
KXG24330	Sorghum	cytosol	73.09	72.41
Zm00001d049629_P002	Maize	nucleus	59.4	69.57
TraesCS7A01G311700.1	Wheat	cytosol	70.07	69.27
TraesCS7B01G211500.1	Wheat	cytosol	69.61	68.81
TraesCS7D01G308200.1	Wheat	cytosol	70.07	66.96
HORVU7Hr1G074460.5	Barley	cytosol	67.52	66.74
Os08t0128300-01	Rice	cytosol	27.61	66.11
Zm00001d008652_P001	Maize	endoplasmic reticulum, plastid	31.32	58.44
PGSC0003DMT400076499	Potato	cytosol	18.56	41.45
PGSC0003DMT400060953	Potato	cytosol	34.8	39.79
PGSC0003DMT400077954	Potato	cytosol	34.8	39.79
PGSC0003DMT400071331	Potato	cytosol	34.8	39.79
PGSC0003DMT400023026	Potato	cytosol	34.8	39.79
PGSC0003DMT400001169	Potato	cytosol	34.8	39.68
PGSC0003DMT400060225	Potato	cytosol	34.57	39.52
PGSC0003DMT400049429	Potato	cytosol	34.57	39.52
PGSC0003DMT400047481	Potato	cytosol	34.11	38.99
PGSC0003DMT400010174	Potato	cytosol	34.11	38.99
PGSC0003DMT400022205	Potato	cytosol	30.39	35.79
PGSC0003DMT400022210	Potato	cytosol	30.39	35.6
PGSC0003DMT400088088	Potato	cytosol	16.01	35.57
PGSC0003DMT400074882	Potato	cytosol	30.39	35.41
PGSC0003DMT400087294	Potato	mitochondrion	22.27	35.04
PGSC0003DMT400052197	Potato	cytosol	32.25	34.84
PGSC0003DMT400074887	Potato	cytosol	29.0	33.78
PGSC0003DMT400076501	Potato	cytosol	15.08	32.5
PGSC0003DMT400019210	Potato	cytosol	24.13	28.89
PGSC0003DMT400056033	Potato	cytosol	28.31	28.05
PGSC0003DMT400038724	Potato	cytosol	23.43	23.06

Protein Annotations

EntrezGene:102600427	MapMan:20.2.2.1.2	Gene3D:3.30.420.40	Gene3D:3.90.640.10	InterPro:Actin	InterPro:Arp3
GO:GO:0000166	GO:GO:0000902	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005856	GO:GO:0005885
GO:GO:0007015	GO:GO:0008150	GO:GO:0009653	GO:GO:0009825	GO:GO:0009987	GO:GO:0010090
GO:GO:0016043	GO:GO:0016049	GO:GO:0030154	GO:GO:0034314	GO:GO:0040007	UniProt:M1AQF6
PFAM:PF00022	EnsemblPlantsGene:PGSC0003DMG400010772	PGSC:PGSC0003DMG400010772	EnsemblPlants:PGSC0003DMT400027956	PANTHER:PTHR11937	PANTHER:PTHR11937:SF258
SMART:SM00268	SUPFAM:SSF53067	UniParc:UPI0002958546	RefSeq:XP_006341790.1	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400010772]

Coordinates

chr5:-:11107817..11117655

Molecular Weight (calculated)

48197.4 Da

IEP (calculated)

6.191

GRAVY (calculated)

-0.240

Length

431 amino acids

Sequence
(BLAST)

001: MIMDPATSRP ALVIDNGTGY TKLGFAGNVE PSFILPTVVA VNESFLNQTR ATTKNSNWLA QHSAGVMADL DFFIGEEALT RSKSSNTYNL SYPIKHGQVD
101: NWDAMERFWQ QCIFNYLRCD PEDHYFLLTE SPMTAPESRE YTGEIMFETF NIPGLYIAVQ PVLALAAGYT TSKCEMTGVV VDIGDGATHV VPVADGYVIG
201: SSIKSIPIAG RDVTLFIQQL MRERGEHVPP EDSFEVARKV KEMYCYTCSD IVKEFNKHDK EPGKYIKHWR GTKPKTGAPY SCDVGYERFL GPEVLFNPEI
301: YNSDFTTPLP DVIDKCIQSA PIDTRRALYK NIVLSGGSTM FKDFHRRLQR DIKKIVDARV LASDARLGGN VKAQPVEVNV VSHPIQRYAV WFGGSVLAST
401: PEFFAACHTK AEYEEYGASI CRTNPVFKGM Y

Best Arabidopsis Sequence Match ( AT1G13180.1 )
(BLAST)

001: MDPTSRPAIV IDNGTGYTKM GFAGNVEPCF ILPTVVAVNE SFLNQSKSSS KATWQTQHNA GVAADLDFYI GDEALAKSRS SSTHNLHYPI EHGQVEDWDA
101: MERYWQQCIF NYLRCDPEDH YFLLTESPLT PPESREYTGE ILFETFNVPG LYIAVNSVLA LAAGYTTSKC EMTGVVVDVG DGATHVVPVA EGYVIGSCIK
201: SIPIAGKDVT LFIQQLMRER GENIPPEDSF DVARKVKEMY CYTCSDIVKE FNKHDKEPAK YIKQWKGVKP KTGAPYTCDV GYERFLGPEV FFNPEIYSND
301: FTTTLPAVID KCIQSAPIDT RRALYKNIVL SGGSTMFKDF GRRLQRDLKK IVDARVLANN ARTGGEITSQ PVEVNVVSHP VQRFAVWFGG SVLSSTPEFF
401: ASCRTKEEYE EYGASICRTN PVFKGMY

Arabidopsis Description

ARP3Actin-related protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAF1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.