Factsheet for GSMUA_Achr2P05960_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr1P28080_001
GSMUA_Achr2P15470_001
GSMUA_Achr4P11860_001
GSMUA_Achr5P09600_001
GSMUA_Achr9P23800_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13180.1	GSMUA_Achr10P...	AT1G29170.1	17267444
AT1G13180.1	GSMUA_Achr2P15470_001	AT1G29170.1	17267444
AT1G13180.1	GSMUA_AchrUn_...	AT1G29170.1	17267444
AT1G13180.1	GSMUA_Achr4P11860_001	AT2G22640.1	17267444
AT1G13180.1	GSMUA_Achr9P23800_001	AT2G22640.1	17267444
AT1G13180.1	GSMUA_AchrUn_...	AT3G27000.1	17267444
AT1G13180.1	GSMUA_Achr1P28080_001	AT3G49290.1	17267444
AT1G13180.1	GSMUA_Achr5P09600_001	AT3G49290.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P07630_001	Banana	cytosol	81.05	57.94
GSMUA_Achr6P21120_001	Banana	cytosol	76.47	54.8
VIT_01s0137g00280.t01	Wine grape	cytosol	75.82	54.21
Solyc05g013940.2.1	Tomato	cytosol	74.84	53.38
PGSC0003DMT400027956	Potato	cytosol	74.84	53.13
KRH59228	Soybean	nucleus	73.2	52.34
Solyc04g024530.2.1	Tomato	cytosol	72.88	51.98
AT1G13180.1	Thale cress	cytosol	72.22	51.76
CDY19392	Canola	cytosol	70.92	50.82
Bra016738.1-P	Field mustard	cytosol	70.26	50.35
Bra019815.1-P	Field mustard	cytosol	70.26	50.35
CDX98005	Canola	cytosol	70.26	50.35
CDY21087	Canola	cytosol	69.93	50.12
CDY34585	Canola	cytosol	69.93	50.12
GSMUA_Achr8P01270_001	Banana	cytosol	62.42	44.73
GSMUA_Achr6P34320_001	Banana	cytosol	26.14	32.79
GSMUA_Achr10P...	Banana	cytosol	23.2	25.82
GSMUA_Achr3P20240_001	Banana	cytosol	25.16	25.67
GSMUA_Achr1P20200_001	Banana	cytosol	29.09	25.65
GSMUA_Achr10P...	Banana	cytosol	27.12	25.23
GSMUA_Achr1P05990_001	Banana	plasma membrane	29.74	24.14
GSMUA_Achr3P02960_001	Banana	cytosol	29.74	24.14
GSMUA_Achr8P16150_001	Banana	cytosol	29.74	24.14
GSMUA_AchrUn_...	Banana	plasma membrane	29.41	23.87
GSMUA_Achr11P...	Banana	cytosol	27.12	23.78
GSMUA_Achr9P03170_001	Banana	cytosol	29.09	23.67
GSMUA_Achr8P02660_001	Banana	cytosol	29.09	23.61
GSMUA_Achr4P31250_001	Banana	cytosol	29.09	23.61
GSMUA_Achr2P16160_001	Banana	cytosol	29.09	23.61
GSMUA_Achr6P25350_001	Banana	cytosol	29.09	23.61
GSMUA_Achr6P02480_001	Banana	cytosol	22.88	23.57
GSMUA_Achr2P15150_001	Banana	cytosol	26.8	23.5
GSMUA_Achr2P08030_001	Banana	cytosol	26.8	23.43
GSMUA_Achr7P10410_001	Banana	cytosol	28.76	23.34
GSMUA_Achr10P...	Banana	cytosol	28.76	23.34
GSMUA_Achr5P29190_001	Banana	cytosol	26.47	23.28
GSMUA_Achr9P08850_001	Banana	cytosol	26.47	23.21
GSMUA_Achr11P...	Banana	cytosol	28.43	23.08
GSMUA_AchrUn_...	Banana	cytosol	28.1	22.11
GSMUA_Achr7P18630_001	Banana	cytosol	22.55	21.56
GSMUA_Achr10P...	Banana	cytosol	17.65	20.53
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	16.99	17.87
GSMUA_Achr8P16860_001	Banana	endoplasmic reticulum	24.18	15.64
GSMUA_AchrUn_...	Banana	cytosol	21.9	15.4
KRH59222	Soybean	cytosol	7.52	11.98
GSMUA_Achr2P05970_001	Banana	cytosol	5.88	10.17

Protein Annotations

MapMan:20.2.2.1.2	Gene3D:3.30.420.40	Gene3D:3.90.640.10	InterPro:Actin	InterPro:Arp3	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005856	GO:GO:0005885	GO:GO:0007015	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0034314	EnsemblPlantsGene:GSMUA_Achr2G05960_001	EnsemblPlants:GSMUA_Achr2P05960_001	EnsemblPlants:GSMUA_Achr2T05960_001	UniProt:M0S5I7	PFAM:PF00022
PANTHER:PTHR11937	PANTHER:PTHR11937:SF258	SMART:SM00268	SUPFAM:SSF53067	UniParc:UPI00029629B4	SEG:seg

Description

Actin-related protein 3 [Source:GMGC_GENE;Acc:GSMUA_Achr2G05960_001]

Coordinates

chr2:-:10861063..10867061

Molecular Weight (calculated)

34783.6 Da

IEP (calculated)

8.059

GRAVY (calculated)

-0.425

Length

306 amino acids

Sequence
(BLAST)

001: MLMGLLRRSL ADKDFDSISQ VPGFESSLHD LPLQKKKKKF EGQSNIDTCQ MTGVVVDVGD GATHVVPVAD GYVIGSSIRS IPIAGKDATQ FIQQLMKERG
101: EHIPPEDSFE VARKIKETYC YTCSDIVKEF NKHDKEHSKY TKQWIGTKPK TRARYSCDVG YERFLGPEIF FHPEIYNDNF TTPLPAIVDK CIQLSPIDTR
201: RALYKNIVLS GGSTMFKDFH RRLQRDLKRI VDARMVTSNA QLIDDVKSQP IEVNVVSHPF QRYAVWFGGS VLASTPEFYE ACHTKAEYEE YGASICRTNP
301: VFKGMY

Best Arabidopsis Sequence Match ( AT1G13180.1 )
(BLAST)

001: MDPTSRPAIV IDNGTGYTKM GFAGNVEPCF ILPTVVAVNE SFLNQSKSSS KATWQTQHNA GVAADLDFYI GDEALAKSRS SSTHNLHYPI EHGQVEDWDA
101: MERYWQQCIF NYLRCDPEDH YFLLTESPLT PPESREYTGE ILFETFNVPG LYIAVNSVLA LAAGYTTSKC EMTGVVVDVG DGATHVVPVA EGYVIGSCIK
201: SIPIAGKDVT LFIQQLMRER GENIPPEDSF DVARKVKEMY CYTCSDIVKE FNKHDKEPAK YIKQWKGVKP KTGAPYTCDV GYERFLGPEV FFNPEIYSND
301: FTTTLPAVID KCIQSAPIDT RRALYKNIVL SGGSTMFKDF GRRLQRDLKK IVDARVLANN ARTGGEITSQ PVEVNVVSHP VQRFAVWFGG SVLSSTPEFF
401: ASCRTKEEYE EYGASICRTN PVFKGMY

Arabidopsis Description

ARP3Actin-related protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAF1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.