Factsheet for GSMUA_Achr1P05990_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 5
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P20200_001	Banana	cytosol	90.45	98.27
GSMUA_Achr2P16160_001	Banana	cytosol	97.61	97.61
GSMUA_Achr9P03170_001	Banana	cytosol	97.35	97.61
GSMUA_Achr10P...	Banana	cytosol	97.35	97.35
Os10t0510000-01	Rice	plastid	97.35	97.35
GSMUA_Achr6P34320_001	Banana	cytosol	62.86	97.13
GSMUA_Achr7P10410_001	Banana	cytosol	97.08	97.08
GSMUA_Achr5P29190_001	Banana	cytosol	89.39	96.84
EER93954	Sorghum	cytosol	96.82	96.82
Zm00001d013873_P001	Maize	plasma membrane, plastid	96.82	96.82
TraesCS1D01G177400.1	Wheat	cytosol	96.82	96.82
TraesCS1B01G201400.1	Wheat	cytosol	96.82	96.82
HORVU1Hr1G047440.2	Barley	cytosol	96.82	96.82
GSMUA_Achr8P02660_001	Banana	cytosol	96.82	96.82
GSMUA_Achr9P08850_001	Banana	cytosol	89.39	96.56
Zm00001d032480_P002	Maize	plasma membrane, plastid	96.55	96.55
GSMUA_Achr8P16150_001	Banana	cytosol	96.29	96.29
GSMUA_Achr6P25350_001	Banana	cytosol	96.29	96.29
GSMUA_AchrUn_...	Banana	plasma membrane	95.76	95.76
GSMUA_Achr3P02960_001	Banana	cytosol	95.76	95.76
GSMUA_Achr11P...	Banana	cytosol	95.49	95.49
GSMUA_Achr11P...	Banana	cytosol	88.33	95.42
GSMUA_Achr3P20240_001	Banana	cytosol	75.6	95.0
CDX87810	Canola	cytosol	94.69	94.69
GSMUA_Achr6P02480_001	Banana	cytosol	74.54	94.61
GSMUA_Achr4P31250_001	Banana	cytosol	94.43	94.43
GSMUA_Achr10P...	Banana	cytosol	65.78	94.3
GSMUA_Achr10P...	Banana	cytosol	82.23	94.22
GSMUA_Achr2P15150_001	Banana	cytosol	86.74	93.7
GSMUA_Achr7P18630_001	Banana	cytosol	76.92	90.62
GSMUA_Achr10P...	Banana	cytosol	63.66	87.27
GSMUA_Achr2P08030_001	Banana	cytosol	77.72	83.71
TraesCS1A01G179000.1	Wheat	cytosol	91.78	76.89
GSMUA_AchrUn_...	Banana	cytosol	45.89	44.47
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	28.12	36.43
GSMUA_Achr8P16860_001	Banana	endoplasmic reticulum	43.24	34.46
GSMUA_Achr8P01270_001	Banana	cytosol	38.46	33.96
GSMUA_Achr2P05970_001	Banana	cytosol	15.92	33.9
GSMUA_Achr9P07630_001	Banana	cytosol	38.46	33.88
GSMUA_Achr6P21120_001	Banana	cytosol	37.67	33.26
GSMUA_Achr2P05960_001	Banana	cytosol	24.14	29.74
GSMUA_AchrUn_...	Banana	cytosol	33.95	29.43

Protein Annotations

MapMan:20.2.1	Gene3D:3.30.420.40	Gene3D:3.90.640.10	InterPro:Actin	InterPro:Actin/actin-like_CS	InterPro:Actin_CS
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSMUA_Achr1G05990_001	EnsemblPlants:GSMUA_Achr1P05990_001
EnsemblPlants:GSMUA_Achr1T05990_001	UniProt:M0RXF7	PFAM:PF00022	PRINTS:PR00190	ScanProsite:PS00406	ScanProsite:PS00432
ScanProsite:PS01132	PANTHER:PTHR11937	PANTHER:PTHR11937:SF252	SMART:SM00268	SUPFAM:SSF53067	UniParc:UPI000294FE10

Description

Actin-2 [Source:GMGC_GENE;Acc:GSMUA_Achr1G05990_001]

Coordinates

chr1:+:4853168..4857013

Molecular Weight (calculated)

41692.1 Da

IEP (calculated)

5.061

GRAVY (calculated)

-0.146

Length

377 amino acids

Sequence
(BLAST)

001: MADAEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEHPILLTEA PLNPKANREK MTQIMFETFD VPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDS LMKILTERGY
201: SFTTSAEREI VRDIKEKLAY VALDYEQELE AARTSSAVEK SYELPDGQVI TIGAERFRCP EVLFQPSLIG METAGIHETT YNSIMKCDVD IRRDLYGNIV
301: LSGGSTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIS KAEYEESGPA IVHRKCF

Best Arabidopsis Sequence Match ( AT2G37620.2 )
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF

Arabidopsis Description

ACT1Actin-3 [Source:UniProtKB/Swiss-Prot;Acc:P0CJ47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.