CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032480_P002	Maize	plasma membrane, plastid	99.73	99.73
Zm00001d013873_P001	Maize	plasma membrane, plastid	99.73	99.73
TraesCS1D01G177400.1	Wheat	cytosol	99.73	99.73
TraesCS1B01G201400.1	Wheat	cytosol	99.73	99.73
HORVU1Hr1G047440.2	Barley	cytosol	99.73	99.73
Os10t0510000-01	Rice	plastid	98.94	98.94
EES08028	Sorghum	cytosol	98.41	98.41
KXG23031	Sorghum	cytosol	97.88	97.88
KXG21029	Sorghum	cytosol	97.08	97.08
GSMUA_Achr1P05990_001	Banana	plasma membrane	96.82	96.82
EER90564	Sorghum	cytosol	96.55	96.55
KXG37705	Sorghum	cytosol	96.29	96.29
CDX87810	Canola	cytosol	95.76	95.76
GSMUA_Achr1P20200_001	Banana	cytosol	88.06	95.68
EES01810	Sorghum	cytosol	94.16	94.41
EES19603	Sorghum	cytosol	92.57	92.82
KXG21030	Sorghum	cytosol	87.53	84.83
TraesCS1A01G179000.1	Wheat	cytosol	94.43	79.11
EER99952	Sorghum	cytosol	45.89	44.47
EER93001	Sorghum	cytosol	42.44	36.12
EER91551	Sorghum	cytosol	33.16	34.72
KXG30555	Sorghum	cytosol	38.46	33.49
KXG24330	Sorghum	cytosol	37.67	32.64
OQU79631	Sorghum	cytosol	33.95	29.63

Protein Annotations

MapMan:20.2.1	Gene3D:3.30.420.40	Gene3D:3.90.640.10	EntrezGene:8065178	InterPro:Actin	InterPro:Actin/actin-like_CS
InterPro:Actin_CS	UniProt:C5WW94	EnsemblPlants:EER93954	ProteinID:EER93954	ProteinID:EER93954.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	PFAM:PF00022	PRINTS:PR00190	ScanProsite:PS00406
ScanProsite:PS00432	ScanProsite:PS01132	PANTHER:PTHR11937	PANTHER:PTHR11937:SF252	SMART:SM00268	EnsemblPlantsGene:SORBI_3001G197400
SUPFAM:SSF53067	unigene:Sbi.2116	UniParc:UPI0001A82771	RefSeq:XP_002466956.1	RefSeq:XP_002466960.1	:

Description

hypothetical protein

Coordinates

chr1:-:17822890..17828000

Molecular Weight (calculated)

41698.1 Da

IEP (calculated)

5.166

GRAVY (calculated)

-0.157

Length

377 amino acids

Sequence
(BLAST)

001: MADAEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFS VPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDS LMKILTERGY
201: SFTTTAEREI VRDIKEKLAY VALDYEQELE TAKSSSSVEK SYELPDGQVI TIGAERFRCP EVLFQPSFIG MEAPGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGSTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIS RAEYEESGPA IVHRKCF

Best Arabidopsis Sequence Match ( AT5G09810.1 )
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN VPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDS LMKILTERGY
201: MFTTTAEREI VRDIKEKLAY VALDYEQELE TAKSSSSVEK NYELPDGQVI TIGAERFRCP EVLFQPSLIG MEAPGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGSTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIS KSEYDESGPS IVHRKCF

Arabidopsis Description

ACT7AtACT7 [Source:UniProtKB/TrEMBL;Acc:A0A178UEW4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.