CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90564
EER90794
EES00964
EES01810
EES08028
EES19603
KXG21029
KXG21030
KXG22422
KXG22681
KXG23031
KXG32003
KXG39048
OQU87413

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G49240.1	EES00964	AT1G72770.1	19033529
AT1G49240.1	KXG22422	AT1G72770.1	19033529
AT1G49240.1	KXG22681	AT1G72770.1	19033529
AT1G49240.1	OQU87413	AT1G72770.1	19033529
AT5G09810.1	EER90794	AT2G31200.1	21798944
AT5G09810.1	KXG39048	AT2G31200.1	21798944
AT5G09810.1	KXG32003	AT3G18060.1	21798944
AT5G09810.1	EER90564	AT5G09810.1	21798944
AT5G09810.1	EES01810	AT5G09810.1	21798944
AT5G09810.1	EES08028	AT5G09810.1	21798944
AT5G09810.1	EES19603	AT5G09810.1	21798944
AT5G09810.1	KXG21029	AT5G09810.1	21798944
AT5G09810.1	KXG21030	AT5G09810.1	21798944
AT5G09810.1	KXG23031	AT5G09810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400076499	Potato	cytosol	47.56	95.85
Zm00001d035720_P002	Maize	cytosol	87.15	89.92
Zm00001d011086_P005	Maize	cytosol	87.15	89.92
KXG21029	Sorghum	cytosol	87.15	89.92
CDX92271	Canola	cytosol	73.01	89.59
Os05t0106600-01	Rice	nucleus	86.38	89.12
TraesCS1D01G020000.1	Wheat	cytosol	85.86	88.59
TraesCS1B01G024500.1	Wheat	golgi, nucleus	85.86	88.59
KRH64098	Soybean	cytosol	85.6	88.33
KRH59535	Soybean	cytosol	85.6	88.33
KRH43389	Soybean	cytosol	85.6	88.33
AT5G09810.1	Thale cress	cytosol	85.35	88.06
Zm00001d035722_P007	Maize	plasma membrane	87.15	88.05
PGSC0003DMT400047481	Potato	cytosol	85.09	87.8
CDY21607	Canola	cytosol	85.09	87.8
KXG23031	Sorghum	cytosol	85.09	87.8
CDX69885	Canola	cytosol	85.09	87.8
Solyc03g078400.2.1	Tomato	nucleus, plastid	85.09	87.8
EES08028	Sorghum	cytosol	85.09	87.8
Bra028615.1-P	Field mustard	cytosol	84.83	87.53
VIT_12s0178g00200.t01	Wine grape	cytosol	84.83	87.53
EER93954	Sorghum	cytosol	84.83	87.53
PGSC0003DMT400010174	Potato	cytosol	84.58	87.27
KXG37705	Sorghum	cytosol	84.58	87.27
CDX81140	Canola	cytosol	84.58	87.27
Solyc11g005330.1.1	Tomato	nucleus	84.58	87.27
CDY56544	Canola	cytosol	84.58	87.27
KRH53856	Soybean	endoplasmic reticulum, mitochondrion	74.29	87.05
Bra006033.1-P	Field mustard	cytosol	84.32	87.0
CDY30296	Canola	cytosol	78.92	86.97
CDY31972	Canola	cytosol	78.92	86.97
CDY40061	Canola	cytosol	78.92	86.97
CDX85794	Canola	cytosol	78.92	86.97
Solyc01g104770.2.1	Tomato	nucleus	84.06	86.74
Bra009081.1-P	Field mustard	cytosol	78.66	86.69
EER90564	Sorghum	cytosol	83.8	86.47
KRH43946	Soybean	endoplasmic reticulum, mitochondrion, nucleus	82.01	84.62
KRH10484	Soybean	endoplasmic reticulum, mitochondrion, nucleus	82.01	84.62
EES01810	Sorghum	cytosol	81.49	84.31
EES19603	Sorghum	cytosol	81.23	84.04
Solyc04g071260.2.1	Tomato	plastid	80.21	82.76
TraesCS1A01G020500.2	Wheat	cytosol	86.38	82.56
HORVU1Hr1G002840.6	Barley	plasma membrane	86.12	82.31
AT1G49240.1	Thale cress	cytosol	79.69	82.23
AT3G18780.3	Thale cress	cytosol	79.43	81.96
CDX95498	Canola	cytosol	79.43	81.96
CDX82326	Canola	cytosol	79.43	81.96
CDX92272	Canola	cytosol	79.43	81.96
CDY18545	Canola	cytosol	79.43	81.96
CDY61982	Canola	cytosol	79.43	81.96
CDX99315	Canola	cytosol	67.35	81.11
Bra022356.1-P	Field mustard	cytosol	67.1	80.81
Bra037560.1-P	Field mustard	cytoskeleton, cytosol	69.15	76.2
Zm00001d011087_P001	Maize	plastid	87.15	74.67
GSMUA_Achr2P08030_001	Banana	cytosol	66.58	74.0
VIT_04s0044g00580.t01	Wine grape	extracellular	84.83	71.74
PGSC0003DMT400076501	Potato	cytosol	36.25	70.5
PGSC0003DMT400087294	Potato	mitochondrion	48.33	68.61
PGSC0003DMT400022210	Potato	cytosol	61.44	64.95
PGSC0003DMT400022205	Potato	cytosol	60.41	64.21
PGSC0003DMT400074882	Potato	cytosol	60.67	63.78
PGSC0003DMT400088088	Potato	cytosol	31.11	62.37
PGSC0003DMT400074887	Potato	cytosol	57.84	60.81
EER99952	Sorghum	cytosol	40.62	40.62
EER93001	Sorghum	cytosol	34.96	30.7
EER91551	Sorghum	cytosol	28.28	30.56
KXG30555	Sorghum	cytosol	32.9	29.56
KXG24330	Sorghum	cytosol	32.65	29.2
OQU79631	Sorghum	cytosol	28.79	25.93

Protein Annotations

MapMan:20.2.1	Gene3D:3.30.420.40	Gene3D:3.90.640.10	EntrezGene:8068648	UniProt:A0A1B6P5M1	InterPro:Actin
InterPro:Actin/actin-like_CS	InterPro:Actin_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
EnsemblPlants:KXG21030	ProteinID:KXG21030	ProteinID:KXG21030.1	PFAM:PF00022	PRINTS:PR00190	ScanProsite:PS00406
ScanProsite:PS01132	PANTHER:PTHR11937	PANTHER:PTHR11937:SF355	SMART:SM00268	EnsemblPlantsGene:SORBI_3009G005900	SUPFAM:SSF53067
unigene:Sbi.17792	UniParc:UPI0001C80909	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:528059..530764

Molecular Weight (calculated)

43009.9 Da

IEP (calculated)

5.143

GRAVY (calculated)

-0.070

Length

389 amino acids

Sequence
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN VPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDS LMKILTERGY
201: SFTTSAEREI VRDIKEKLAY IALDYEQELE TAKNSSSVEK SYELPDGQVI TIGAERFRCP EVLFQPSMIG MEAAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGSTMFPG IADRMSKEIT SLAPSSMKIK LCLLHFSRHL WQICMLPLFS SDLSPLGDRP SFVCCGSMCE HAVSYHLVCE MSCCQTCLA

Best Arabidopsis Sequence Match ( AT2G37620.2 )
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF

Arabidopsis Description

ACT1Actin-3 [Source:UniProtKB/Swiss-Prot;Acc:P0CJ47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.