CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG24330
KXG30555

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G27000.1	KXG24330	AT1G13180.1	17267444
AT3G27000.1	KXG30555	AT1G13180.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022558_P001	Maize	cytosol	99.74	99.74
TraesCS3D01G362400.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	95.89	95.89
GSMUA_AchrUn_...	Banana	cytosol	94.09	94.09
TraesCS3A01G369400.1	Wheat	cytosol	95.63	93.0
VIT_14s0068g01630.t01	Wine grape	cytosol	91.26	91.26
KRG94584	Soybean	cytosol	90.75	90.75
Solyc02g094320.2.1	Tomato	cytosol	89.97	89.97
KRH06905	Soybean	cytosol	89.97	89.97
Bra039097.1-P	Field mustard	cytosol	89.46	89.46
CDY20066	Canola	cytosol	89.46	89.46
Bra025243.1-P	Field mustard	cytosol	84.06	89.34
CDY00172	Canola	cytosol	89.2	89.2
AT3G27000.1	Thale cress	cytosol	89.2	89.2
TraesCS3B01G401300.2	Wheat	cytosol	95.37	89.18
CDY52404	Canola	cytosol	89.2	87.85
CDY13674	Canola	cytosol	89.2	87.85
PGSC0003DMT400052197	Potato	cytosol	85.6	83.46
HORVU4Hr1G007240.3	Barley	cytosol	92.8	76.97
KXG21029	Sorghum	cytosol	44.99	46.42
EER90564	Sorghum	cytosol	44.47	45.89
KXG23031	Sorghum	cytosol	44.47	45.89
EER93954	Sorghum	cytosol	44.47	45.89
KXG37705	Sorghum	cytosol	44.22	45.62
EES08028	Sorghum	cytosol	44.22	45.62
EES01810	Sorghum	cytosol	43.96	45.48
EES19603	Sorghum	cytosol	43.19	44.68
KXG21030	Sorghum	cytosol	40.62	40.62
KXG30555	Sorghum	cytosol	34.7	31.18
KXG24330	Sorghum	cytosol	31.11	27.82
EER91551	Sorghum	cytosol	25.45	27.5
EER93001	Sorghum	cytosol	31.11	27.31
OQU79631	Sorghum	cytosol	27.25	24.54

Protein Annotations

MapMan:20.2.2.1.1	Gene3D:3.30.420.40	Gene3D:3.90.640.10	EntrezGene:8077510	InterPro:Actin	InterPro:Arp2
UniProt:C5X6C9	EnsemblPlants:EER99952	ProteinID:EER99952	ProteinID:EER99952.1	GO:GO:0000166	GO:GO:0000902
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005856	GO:GO:0005885	GO:GO:0007015	GO:GO:0008150	GO:GO:0009653	GO:GO:0009825
GO:GO:0009987	GO:GO:0010090	GO:GO:0016043	GO:GO:0016049	GO:GO:0030154	GO:GO:0034314
GO:GO:0040007	PFAM:PF00022	PRINTS:PR00190	PANTHER:PTHR11937	PANTHER:PTHR11937:SF149	SMART:SM00268
EnsemblPlantsGene:SORBI_3002G426300	SUPFAM:SSF53067	unigene:Sbi.17087	UniParc:UPI0001A848CC	RefSeq:XP_002463431.1	:

Description

hypothetical protein

Coordinates

chr2:-:77277834..77283746

Molecular Weight (calculated)

43986.1 Da

IEP (calculated)

5.198

GRAVY (calculated)

-0.216

Length

389 amino acids

Sequence
(BLAST)

001: MESRNVVVCD NGTGYVKCGF AGENFPTSVF PCVVGRPLLR YEESLQEQEL TDIVVGAACA DLRHQLDVSY PVTNGIVQNW DDMGHIWDNA FYSELKVDPS
101: ECKILLTDPP LNPVKNREKM IETMFEKYNF AGVFIQIQAV LSLYAQGLLT GLVIDSGDGV THVVPVVDGY SYPHLTKRMN VAGRHITSYL VDLLSRRGYA
201: MNKSADFETV REIKEKLCYI SYDYKREYQL GLETTILVKS YTLPDGRVIK VGTERFQAPE ALFTPELIDV EGDGMADMAF RCIQEMDIDN RMTLYQHIVL
301: SGGSTMYPGL PSRLEKEILD RYLDVVLKGN KDGLKKLRLR IEDPPRRKHM VYLGGAVLAG IMKDAPEFWI TRQEYQEEGV ACLRKCGQS

Best Arabidopsis Sequence Match ( AT3G27000.1 )
(BLAST)

001: MDNKNVVVCD NGTGYVKCGF AGENFPTSVF PCVVGRPLLR YEESLMEQQV KDIVVGETCS ELRHQLDINY PVHNGIVQNW DDMEHVWDHA FYNELKINPS
101: DCKILLTDPP LNPSKNREKM IETMFEKYNF AGVFIQIQAV LTLYAQGLLT GLVIDSGDGV THVVPVVDGY SFPHLTKRMN VAGRHITAYL VDLLSRRGYA
201: MNKTADFETV REIKEKLCYI SYDYKRESQL GLETTILVKN YTLPDGRVIK VGTERFQAPE ALFTPELIDV EGDGMADMVF RCIQEMDIDN RMMLYQHIVL
301: SGGSTMYPGL PSRLEKEIQD RYLDTVLKGN KDGLKKLRLR IEDPPRRKHM VYLGGAVLAG IMKDAPEFWI NREDYMEEGI NCLNKMSQA

Arabidopsis Description

ARP2Actin-related protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSD6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.