CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90564
EER90794
EES00964
EES01810
EES08028
EES19603
KXG21029
KXG21030
KXG22422
KXG22681
KXG23031
KXG32003
KXG39048
OQU87413

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G49240.1	EES00964	AT1G72770.1	19033529
AT1G49240.1	KXG22422	AT1G72770.1	19033529
AT1G49240.1	KXG22681	AT1G72770.1	19033529
AT1G49240.1	OQU87413	AT1G72770.1	19033529
AT5G09810.1	EER90794	AT2G31200.1	21798944
AT5G09810.1	KXG39048	AT2G31200.1	21798944
AT5G09810.1	KXG32003	AT3G18060.1	21798944
AT5G09810.1	EER90564	AT5G09810.1	21798944
AT5G09810.1	EES01810	AT5G09810.1	21798944
AT5G09810.1	EES08028	AT5G09810.1	21798944
AT5G09810.1	EES19603	AT5G09810.1	21798944
AT5G09810.1	KXG21029	AT5G09810.1	21798944
AT5G09810.1	KXG21030	AT5G09810.1	21798944
AT5G09810.1	KXG23031	AT5G09810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010159_P002	Maize	extracellular, plasma membrane	99.2	99.2
Os05t0438800-01	Rice	plasma membrane, plastid	98.14	98.14
HORVU1Hr1G074350.1	Barley	cytosol	97.07	97.07
TraesCS1D01G274400.1	Wheat	cytosol	97.07	97.07
TraesCS1B01G283900.1	Wheat	cytosol	97.07	97.07
TraesCS1A01G274400.1	Wheat	golgi	97.07	97.07
EES01810	Sorghum	cytosol	93.35	93.35
KXG23031	Sorghum	cytosol	93.09	92.84
CDX85794	Canola	cytosol	86.97	92.63
CDY40061	Canola	cytosol	86.97	92.63
KRH43389	Soybean	cytosol	92.82	92.57
KRH59535	Soybean	cytosol	92.82	92.57
KXG21029	Sorghum	cytosol	92.82	92.57
EES08028	Sorghum	cytosol	92.82	92.57
EER93954	Sorghum	cytosol	92.82	92.57
Bra028615.1-P	Field mustard	cytosol	92.82	92.57
AT5G09810.1	Thale cress	cytosol	92.82	92.57
CDY21607	Canola	cytosol	92.55	92.31
VIT_12s0178g00200.t01	Wine grape	cytosol	92.55	92.31
CDX69885	Canola	cytosol	92.55	92.31
EER90564	Sorghum	cytosol	92.55	92.31
GSMUA_Achr9P03170_001	Banana	cytosol	92.29	92.29
CDY30296	Canola	cytosol	86.44	92.07
CDY31972	Canola	cytosol	86.44	92.07
Solyc01g104770.2.1	Tomato	nucleus	92.29	92.04
KRH64098	Soybean	cytosol	92.29	92.04
GSMUA_Achr5P29190_001	Banana	cytosol	85.11	91.95
Bra009081.1-P	Field mustard	cytosol	86.17	91.78
CDX81140	Canola	cytosol	92.02	91.78
GSMUA_Achr6P25350_001	Banana	cytosol	92.02	91.78
PGSC0003DMT400047481	Potato	cytosol	92.02	91.78
CDY56544	Canola	cytosol	92.02	91.78
GSMUA_Achr10P...	Banana	cytosol	92.02	91.78
Solyc03g078400.2.1	Tomato	nucleus, plastid	92.02	91.78
PGSC0003DMT400076499	Potato	cytosol	47.07	91.71
KRH53856	Soybean	endoplasmic reticulum, mitochondrion	80.85	91.57
GSMUA_Achr3P02960_001	Banana	cytosol	91.76	91.51
GSMUA_Achr2P16160_001	Banana	cytosol	91.76	91.51
Bra006033.1-P	Field mustard	cytosol	91.76	91.51
GSMUA_Achr8P16150_001	Banana	cytosol	91.76	91.51
Solyc11g005330.1.1	Tomato	nucleus	91.76	91.51
PGSC0003DMT400010174	Potato	cytosol	91.76	91.51
GSMUA_Achr9P08850_001	Banana	cytosol	84.84	91.4
GSMUA_Achr8P02660_001	Banana	cytosol	91.49	91.25
KXG37705	Sorghum	cytosol	91.22	90.98
GSMUA_Achr7P10410_001	Banana	cytosol	91.22	90.98
GSMUA_Achr11P...	Banana	cytosol	84.31	90.83
GSMUA_Achr6P34320_001	Banana	cytosol	58.78	90.57
KRH43946	Soybean	endoplasmic reticulum, mitochondrion, nucleus	90.43	90.19
KRH10484	Soybean	endoplasmic reticulum, mitochondrion, nucleus	90.43	90.19
GSMUA_Achr11P...	Banana	cytosol	89.89	89.66
AT1G49240.1	Thale cress	cytosol	88.56	88.33
CDX82326	Canola	cytosol	88.56	88.33
Bra022356.1-P	Field mustard	cytosol	75.8	88.24
CDX99315	Canola	cytosol	75.8	88.24
AT3G18780.3	Thale cress	cytosol	88.3	88.06
CDX92272	Canola	cytosol	88.3	88.06
CDX95498	Canola	cytosol	88.3	88.06
CDY18545	Canola	cytosol	88.3	88.06
CDY61982	Canola	cytosol	88.3	88.06
Solyc04g071260.2.1	Tomato	plastid	88.03	87.8
CDX92271	Canola	cytosol	73.14	86.75
PGSC0003DMT400076501	Potato	cytosol	44.41	83.5
GSMUA_Achr10P...	Banana	cytosol	60.37	82.55
KXG21030	Sorghum	cytosol	84.04	81.23
Bra037560.1-P	Field mustard	cytoskeleton, cytosol	75.53	80.45
VIT_04s0044g00580.t01	Wine grape	extracellular	92.29	75.43
PGSC0003DMT400087294	Potato	mitochondrion	54.79	75.18
PGSC0003DMT400022210	Potato	cytosol	65.96	67.39
PGSC0003DMT400022205	Potato	cytosol	65.16	66.94
PGSC0003DMT400074882	Potato	cytosol	65.69	66.76
PGSC0003DMT400074887	Potato	cytosol	62.5	63.51
PGSC0003DMT400088088	Potato	cytosol	31.38	60.82
EER99952	Sorghum	cytosol	44.68	43.19
EER93001	Sorghum	cytosol	41.22	34.99
EER91551	Sorghum	cytosol	32.98	34.44
KXG30555	Sorghum	cytosol	37.5	32.56
KXG24330	Sorghum	cytosol	36.7	31.72
OQU79631	Sorghum	cytosol	33.78	29.4

Protein Annotations

MapMan:20.2.1	Gene3D:3.30.420.40	Gene3D:3.90.640.10	EntrezGene:8058524	InterPro:Actin	InterPro:Actin/actin-like_CS
InterPro:Actin_CS	UniProt:C5YYR1	EnsemblPlants:EES19603	ProteinID:EES19603	ProteinID:EES19603.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	PFAM:PF00022	PRINTS:PR00190	ScanProsite:PS00406
ScanProsite:PS00432	ScanProsite:PS01132	PANTHER:PTHR11937	PANTHER:PTHR11937:SF248	SMART:SM00268	EnsemblPlantsGene:SORBI_3009G153000
SUPFAM:SSF53067	unigene:Sbi.14160	UniParc:UPI0001A894EE	RefSeq:XP_002441173.1	:	:

Description

hypothetical protein

Coordinates

chr9:-:50933121..50936646

Molecular Weight (calculated)

41655.1 Da

IEP (calculated)

5.053

GRAVY (calculated)

-0.194

Length

376 amino acids

Sequence
(BLAST)

001: MADEDIQPIV CDNGTGMVKA GFAGDDAPRA VFPSIVGRPR HTGVMVGMGQ KDAYVGDEAQ AKRGILTLKY PIEHGIVNNW DDMEKIWHHT FYNELRVAPE
101: DHPVLLTEAP LNPKANREKM TQIMFETFEC PAMYVAIQAV LSLYASGRTT GIVMDSGDGV SHTVPIYEGY TLPHAILRLD LAGRDLTDHL MKILTERGYS
201: LTTSAEREIV RDIKEKLAYV ALDYEQELET ARSSSSVEKS YEMPDGQVIT IGSERFRCPE VLFQPSLVGM ESPGVHEATY NSIMKCDVDI RKDLYGNVVL
301: SGGSTMFPGI ADRMSKEITS LAPSSMKIKV IAPPERKYSV WIGGSILASL STFQQMWISK AEYDETGPGI VHMKCF

Best Arabidopsis Sequence Match ( AT2G37620.2 )
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF

Arabidopsis Description

ACT1Actin-3 [Source:UniProtKB/Swiss-Prot;Acc:P0CJ47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.