CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum

Predictor Summary:

cytosol 5
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 25806999
endoplasmic reticulum: 27224218

msms PMID: 25806999 doi

AH Kamal, S Komatsu

National Institute of Crop Science, National Agriculture and Food Research Organization, Kannondai 2-1-18, Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93168
KRG95386
KRG95660
KRH01660
KRH10268
KRH23061
KRH24799
KRH29804
KRH38098
KRH41795
KRH43389
KRH53856
KRH56507
KRH59535
KRH60498
KRH64098
KRH67068
KRH67374
KRH70465
KRH71847

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G09810.1	KRG95660	AT2G31200.1	21798944
AT5G09810.1	KRH67374	AT2G31200.1	21798944
AT5G09810.1	KRG93168	AT2G37620.1	21798944
AT5G09810.1	KRG95386	AT2G37620.1	21798944
AT5G09810.1	KRH01660	AT2G37620.1	21798944
AT5G09810.1	KRH10268	AT2G37620.1	21798944
AT5G09810.1	KRH23061	AT2G37620.1	21798944
AT5G09810.1	KRH24799	AT2G37620.1	21798944
AT5G09810.1	KRH29804	AT2G37620.1	21798944
AT5G09810.1	KRH38098	AT2G37620.1	21798944
AT5G09810.1	KRH56507	AT2G37620.1	21798944
AT5G09810.1	KRH67068	AT2G37620.1	21798944
AT5G09810.1	KRH70465	AT2G37620.1	21798944
AT5G09810.1	KRH71847	AT2G37620.1	21798944
AT5G09810.1	KRG93168	AT3G12110.1	21798944
AT5G09810.1	KRG95386	AT3G12110.1	21798944
AT5G09810.1	KRH01660	AT3G12110.1	21798944
AT5G09810.1	KRH10268	AT3G12110.1	21798944
AT5G09810.1	KRH23061	AT3G12110.1	21798944
AT5G09810.1	KRH24799	AT3G12110.1	21798944
AT5G09810.1	KRH29804	AT3G12110.1	21798944
AT5G09810.1	KRH38098	AT3G12110.1	21798944
AT5G09810.1	KRH56507	AT3G12110.1	21798944
AT5G09810.1	KRH67068	AT3G12110.1	21798944
AT5G09810.1	KRH70465	AT3G12110.1	21798944
AT5G09810.1	KRH71847	AT3G12110.1	21798944
AT5G09810.1	KRH41795	AT3G18060.1	21798944
AT5G09810.1	KRH60498	AT3G18060.1	21798944
AT5G09810.1	KRH43389	AT5G09810.1	21798944
AT5G09810.1	KRH53856	AT5G09810.1	21798944
AT5G09810.1	KRH59535	AT5G09810.1	21798944
AT5G09810.1	KRH64098	AT5G09810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P34320_001	Banana	cytosol	70.78	96.31
KRH64098	Soybean	cytosol	100.0	88.06
KRH43389	Soybean	cytosol	99.4	87.53
KRH59535	Soybean	cytosol	99.4	87.53
PGSC0003DMT400047481	Potato	cytosol	99.1	87.27
Solyc03g078400.2.1	Tomato	nucleus, plastid	99.1	87.27
AT5G09810.1	Thale cress	cytosol	98.49	86.74
CDX69885	Canola	cytosol	98.49	86.74
CDX81140	Canola	cytosol	98.49	86.74
CDY21607	Canola	cytosol	98.49	86.74
CDY56544	Canola	cytosol	98.49	86.74
PGSC0003DMT400010174	Potato	cytosol	98.49	86.74
Solyc11g005330.1.1	Tomato	nucleus	98.49	86.74
Bra006033.1-P	Field mustard	cytosol	98.19	86.47
Bra028615.1-P	Field mustard	cytosol	98.19	86.47
Os05t0106600-01	Rice	nucleus	97.89	86.21
HORVU5Hr1G117900.1	Barley	cytosol	97.59	85.94
KXG21029	Sorghum	cytosol	97.59	85.94
Os11t0163100-01	Rice	nucleus, plasma membrane, plastid	97.59	85.94
TraesCS5B01G124100.1	Wheat	cytosol	97.59	85.94
TraesCS5B01G516100.1	Wheat	cytosol	97.59	85.94
TraesCS5D01G516200.1	Wheat	cytosol	97.59	85.94
Zm00001d011086_P005	Maize	cytosol	97.59	85.94
Zm00001d035720_P002	Maize	cytosol	97.59	85.94
CDX85794	Canola	cytosol	91.27	85.84
CDY30296	Canola	cytosol	91.27	85.84
CDY31972	Canola	cytosol	91.27	85.84
CDY40061	Canola	cytosol	91.27	85.84
GSMUA_Achr3P02960_001	Banana	cytosol	97.29	85.68
GSMUA_Achr8P16150_001	Banana	cytosol	97.29	85.68
TraesCS1B01G024500.1	Wheat	golgi, nucleus	97.29	85.68
TraesCS1D01G020000.1	Wheat	cytosol	97.29	85.68
GSMUA_Achr9P03170_001	Banana	cytosol	96.99	85.64
Bra009081.1-P	Field mustard	cytosol	90.96	85.55
TraesCS4A01G356100.2	Wheat	cytosol	97.59	85.49
EES08028	Sorghum	cytosol	96.99	85.41
GSMUA_Achr6P25350_001	Banana	cytosol	96.99	85.41
KXG23031	Sorghum	cytosol	96.99	85.41
KRG95386	Soybean	cytosol	96.69	85.15
KRH10268	Soybean	mitochondrion, nucleus	96.69	85.15
Os01t0964133-01	Rice	plasma membrane	96.69	85.15
Zm00001d053177_P004	Maize	cytosol	96.69	85.15
GSMUA_Achr2P16160_001	Banana	cytosol	96.39	84.88
KRH23061	Soybean	endoplasmic reticulum, mitochondrion, nucleus	96.39	84.88
KRH67068	Soybean	endoplasmic reticulum, mitochondrion, nucleus	96.39	84.88
GSMUA_Achr10P...	Banana	cytosol	96.08	84.62
Os03t0836000-01	Rice	plasma membrane, plastid	96.08	84.62
GSMUA_Achr7P10410_001	Banana	cytosol	95.78	84.35
GSMUA_Achr8P02660_001	Banana	cytosol	95.78	84.35
KRH29804	Soybean	endoplasmic reticulum, mitochondrion, nucleus	95.78	84.35
KRH38098	Soybean	cytosol	95.78	84.35
KRH56507	Soybean	endoplasmic reticulum, mitochondrion	95.78	84.35
GSMUA_Achr11P...	Banana	cytosol	88.55	84.24
GSMUA_Achr9P08850_001	Banana	cytosol	88.55	84.24
GSMUA_Achr5P29190_001	Banana	cytosol	88.25	84.2
Zm00001d035722_P007	Maize	plasma membrane	97.59	84.16
EER90564	Sorghum	cytosol	95.48	84.08
KRG93168	Soybean	mitochondrion, nucleus	95.48	84.08
KRH01660	Soybean	mitochondrion, nucleus	95.48	84.08
KRH70465	Soybean	mitochondrion, nucleus	95.48	84.08
KRH71847	Soybean	endoplasmic reticulum, nucleus	95.48	84.08
GSMUA_Achr11P...	Banana	cytosol	94.88	83.55
KRH10484	Soybean	endoplasmic reticulum, mitochondrion, nucleus	94.88	83.55
KRH43946	Soybean	endoplasmic reticulum, mitochondrion, nucleus	94.88	83.55
Zm00001d012277_P001	Maize	cytosol	93.98	82.98
EES01810	Sorghum	cytosol	93.07	82.18
TraesCS5D01G132200.1	Wheat	golgi	91.57	81.94
Os05t0438800-01	Rice	plasma membrane, plastid	92.47	81.65
Zm00001d042731_P002	Maize	extracellular, plasma membrane, plastid	92.47	81.65
CDX82326	Canola	cytosol	92.47	81.43
HORVU1Hr1G074350.1	Barley	cytosol	92.17	81.38
TraesCS1A01G274400.1	Wheat	golgi	92.17	81.38
TraesCS1B01G283900.1	Wheat	cytosol	92.17	81.38
TraesCS1D01G274400.1	Wheat	cytosol	92.17	81.38
AT1G49240.1	Thale cress	cytosol	92.17	81.17
AT3G18780.3	Thale cress	cytosol	92.17	81.17
CDX92272	Canola	cytosol	92.17	81.17
CDX95498	Canola	cytosol	92.17	81.17
CDY18545	Canola	cytosol	92.17	81.17
CDY61982	Canola	cytosol	92.17	81.17
Zm00001d034761_P002	Maize	cytosol	95.48	80.87
EES19603	Sorghum	cytosol	91.57	80.85
Zm00001d010159_P002	Maize	extracellular, plasma membrane	91.27	80.59
Bra022356.1-P	Field mustard	cytosol	77.71	79.88
CDX99315	Canola	cytosol	77.71	79.88
HORVU1Hr1G002840.6	Barley	plasma membrane	97.29	79.36
TraesCS1A01G020500.2	Wheat	cytosol	97.29	79.36
TraesCS5A01G124300.2	Wheat	golgi	97.59	79.22
CDX92271	Canola	cytosol	75.0	78.55
KXG21030	Sorghum	cytosol	87.05	74.29
Zm00001d007792_P001	Maize	cytosol	59.04	74.24
KRH24799	Soybean	cytosol	91.27	73.9
Zm00001d008746_P001	Maize	cytosol	60.84	73.45
GSMUA_Achr2P08030_001	Banana	cytosol	77.41	73.43
Bra037560.1-P	Field mustard	cytoskeleton, cytosol	77.11	72.52
Zm00001d004087_P001	Maize	cytosol	46.99	72.22
GSMUA_Achr10P...	Banana	cytosol	59.64	72.0
VIT_04s0044g00580.t01	Wine grape	extracellular	99.1	71.52
Zm00001d011087_P001	Maize	plastid	97.59	71.37
HORVU5Hr1G039850.3	Barley	mitochondrion	97.59	69.68
Zm00001d016605_P001	Maize	cytosol	31.33	65.82
Zm00001d019635_P001	Maize	cytosol	26.81	64.49
Zm00001d003298_P001	Maize	cytosol	47.29	59.7
Zm00001d019396_P001	Maize	cytosol	29.52	58.33
Zm00001d016508_P001	Maize	cytosol	23.8	57.25
Zm00001d004855_P002	Maize	cytoskeleton, cytosol, nucleus	96.08	54.07
Os01t0866100-01	Rice	plasma membrane	30.72	50.25
KRG94584	Soybean	cytosol	43.37	37.02
KRH06905	Soybean	cytosol	42.77	36.5
KRH39934	Soybean	cytosol	34.34	34.55
KRH23861	Soybean	cytosol, nucleus	37.05	34.07
KRH13968	Soybean	cytosol, nucleus	36.75	33.8
KRH32953	Soybean	cytosol	36.45	33.52
KRH66446	Soybean	nucleus	42.17	31.46
KRH41617	Soybean	nucleus	40.36	31.09
KRH48882	Soybean	nucleus	41.57	30.94
Zm00001d034421_P004	Maize	plastid	42.47	30.13
KRH59228	Soybean	nucleus	38.25	29.67
KRH59222	Soybean	cytosol	15.96	27.6
KRH61849	Soybean	cytosol, nucleus	33.73	25.69

Protein Annotations

MapMan:20.2.1	Gene3D:3.30.420.40	Gene3D:3.90.640.10	EMBL:ACUP02003487	InterPro:Actin	InterPro:Actin/actin-like_CS
InterPro:Actin_CS	EnsemblPlantsGene:GLYMA_06G150100	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
UniProt:I1KBG2	EnsemblPlants:KRH53856	ProteinID:KRH53856	ProteinID:KRH53856.1	ProteinID:KRH53857.1	PFAM:PF00022
PRINTS:PR00190	ScanProsite:PS00406	ScanProsite:PS00432	ScanProsite:PS01132	PANTHER:PTHR11937	PANTHER:PTHR11937:SF358
SMART:SM00268	SUPFAM:SSF53067	UniParc:UPI00023C359C	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:12256251..12259267

Molecular Weight (calculated)

37095.7 Da

IEP (calculated)

5.267

GRAVY (calculated)

-0.190

Length

332 amino acids

Sequence
(BLAST)

001: MVGMGQKDAY VGDEAQSKRG ILTLKYPIEH GIVSNWDDME KIWHHTFYNE LRVAPEEHPV LLTEAPLNPK ANREKMTQIM FETFNVPAMY VAIQAVLSLY
101: ASGRTTGIVL DSGDGVSHTV PIYEGYALPH AILRLDLAGR DLTDSLMKIL TERGYMFTTS AEREIVRDMK EKLAYVALDY EQELETAKSS SSVEKNYELP
201: DGQVITIGAE RFRCPEVLFQ PSMIGMEAAG IHETTYNSIM KCDVDIRKDL YGNIVLSGGS TMFPGIADRM SKEITALAPS SMKIKVVAPP ERKYSVWIGG
301: SILASLSTFQ QMWISKGEYD ESGPSIVHRK CF

Best Arabidopsis Sequence Match ( AT2G37620.1 )
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF

Arabidopsis Description

ACT1Actin-3 [Source:UniProtKB/Swiss-Prot;Acc:P0CJ47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.