CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH66446	Soybean	nucleus	84.92	82.25
KRH48882	Soybean	nucleus	84.22	81.39
Solyc12g037980.1.1	Tomato	nucleus	82.13	81.38
PGSC0003DMT400056033	Potato	cytosol	82.13	81.38
CDX83847	Canola	cytosol	74.94	73.58
CDX96721	Canola	cytosol	74.71	73.52
CDY26159	Canola	cytosol	75.17	73.3
AT1G18450.1	Thale cress	cytosol	74.94	73.24
CDY19213	Canola	cytosol	74.94	73.08
GSMUA_Achr8P16860_001	Banana	endoplasmic reticulum	77.49	70.61
Os08t0137200-01	Rice	nucleus	71.93	69.98
EER93001	Sorghum	cytosol	71.69	69.75
TraesCS5D01G364800.1	Wheat	cytosol	71.69	69.75
TraesCS5B01G358500.1	Wheat	cytosol	71.69	69.75
Zm00001d027326_P001	Maize	cytosol, extracellular, nucleus	71.46	69.53
TraesCS5A01G356000.1	Wheat	cytosol, nucleus	71.46	69.53
TraesCS6B01G189000.1	Wheat	cytosol	70.77	68.85
TraesCS6D01G149800.1	Wheat	cytosol	70.3	68.4
TraesCS6A01G162300.2	Wheat	cytosol	69.84	67.95
HORVU6Hr1G032610.8	Barley	cytosol	70.53	63.2
VIT_17s0000g04010.t01	Wine grape	mitochondrion	64.5	62.9
HORVU5Hr1G088030.1	Barley	plastid	71.23	60.43
KRG93168	Soybean	mitochondrion, nucleus	35.73	40.85
KRH71847	Soybean	endoplasmic reticulum, nucleus	35.73	40.85
KRH38098	Soybean	cytosol	35.73	40.85
KRH43389	Soybean	cytosol	35.5	40.58
KRH56507	Soybean	endoplasmic reticulum, mitochondrion	35.5	40.58
KRH01660	Soybean	mitochondrion, nucleus	35.5	40.58
KRH59535	Soybean	cytosol	35.5	40.58
KRH29804	Soybean	endoplasmic reticulum, mitochondrion, nucleus	35.5	40.58
KRH64098	Soybean	cytosol	35.5	40.58
KRH70465	Soybean	mitochondrion, nucleus	35.5	40.58
KRH67068	Soybean	endoplasmic reticulum, mitochondrion, nucleus	35.5	40.58
KRH53856	Soybean	endoplasmic reticulum, mitochondrion	31.09	40.36
KRH23061	Soybean	endoplasmic reticulum, mitochondrion, nucleus	35.27	40.32
KRG95386	Soybean	cytosol	35.27	40.32
KRH10268	Soybean	mitochondrion, nucleus	35.27	40.32
KRH10484	Soybean	endoplasmic reticulum, mitochondrion, nucleus	34.8	39.79
KRH43946	Soybean	endoplasmic reticulum, mitochondrion, nucleus	34.8	39.79
KRH24799	Soybean	cytosol	33.64	35.37
KRG94584	Soybean	cytosol	28.54	31.62
KRH06905	Soybean	cytosol	28.31	31.36
KRH59228	Soybean	nucleus	28.31	28.5
KRH23861	Soybean	cytosol, nucleus	22.97	27.42
KRH13968	Soybean	cytosol, nucleus	22.74	27.15
KRH39934	Soybean	cytosol	20.42	26.67
KRH32953	Soybean	cytosol	22.27	26.59
KRH59222	Soybean	cytosol	11.6	26.04
KRH61849	Soybean	cytosol, nucleus	25.06	24.77

Protein Annotations

EMBL:ACUP02004772	EMBL:ACUP02004773	EnsemblPlants:KRH41617	EnsemblPlantsGene:GLYMA_08G040300	EntrezGene:100819549	Gene3D:3.30.420.40
Gene3D:3.90.640.10	InterPro:Actin	PANTHER:PTHR11937	PANTHER:PTHR11937:SF274	PFAM:PF00022	PRINTS:PR00190
ProteinID:KRH41617	ProteinID:KRH41617.1	SEG:seg	SMART:SM00268	SUPFAM:SSF53067	UniParc:UPI0002338546
UniProt:I1KQ45	MapMan:12.4.6.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:3170395..3177206

Molecular Weight (calculated)

47635.1 Da

IEP (calculated)

5.032

GRAVY (calculated)

-0.203

Length

431 amino acids

Sequence
(BLAST)

001: MYGGDEVSAI VIDLGSHTCK AGYAGEDAPK AVFPSVVGAI DQMDIDGTAD INDENSDKTK GKCKLYVGSQ SLGYRRDHME VLSPLKNGVV VDWNIVDNIW
101: DHALRECLLV DPKERPMLLA EPCSNTQEQR ERAAELMFEK YKVPALFLAK NAVLTSFASG RATSLVVDSG GGSTTVVPVL DGYVLQKAVI ASPIGGEFLT
201: DCLMKSLEGK GITIRPRCSF KKKEIHPGNL QTVDLDFPHT TESYKLYSQR VIASDIKECV CRTPDSPYDE RVYSNIPMTP YELPDGQIIE VGSDRFKIPD
301: ILFNPLLVQT IPGMESFAEI APSIRGLPKM IIESINKCDV DIRRELFSTI LLTGGTASMH QLKERIEKDL LEESPQAARV KVFVSGNATE RRFSVWIGGS
401: ILASLGSFQQ MWFSKSEYEE QGASYIQRKC P

Best Arabidopsis Sequence Match ( AT1G18450.1 )
(BLAST)

001: MYGGDEVSAI VVDLGSHTCK AGYAGEDAPK AVFPSVIGAV DGVEAMDVDV DSTKTNSNSE DSKTESEKEK SKRKLYVGSQ AMSYRRDHME VLSPIKDGIV
101: SDWDLVDNIW EHAFKSCLMI DPTEHPMLLA EPPLNTQQQR EKAAELMFEK YKVPALFMAK NPVLTSFATG RATSLVVDCG GGSTTISPVH DGYVLQKAVV
201: SSPLGGEFLT DCLLKSLESK GIKIRPRYSF KRKEVRAGEF QVEDVDIPDT TESYKLFCQR MIVGDIKDSI CRVPDTPYDD KSYSNIPTTS YELPDGQTLE
301: IGADRFKVPD VMFNPSIVQT IPGMEKYAEM IPSVRGLPHM VMESINKCDV DIRRELYSSI LLAGGTSSMQ QLKERLEKDL IEESPHSARV KVLASGNTTE
401: RRFSVWIGGS ILASLGSFQQ MWFSKSEYEE HGASYIQRKC P

Arabidopsis Description

ARP4Actin-related protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q84M92]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.