Factsheet for Os08t0137200-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 19621931
nucleus: 23777608
nucleus: 26035336
plasma membrane: 27800704

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027326_P001	Maize	cytosol, extracellular, nucleus	91.87	91.87
EER93001	Sorghum	cytosol	91.87	91.87
TraesCS6B01G189000.1	Wheat	cytosol	91.65	91.65
TraesCS5B01G358500.1	Wheat	cytosol	91.42	91.42
TraesCS5D01G364800.1	Wheat	cytosol	91.2	91.2
TraesCS5A01G356000.1	Wheat	cytosol, nucleus	90.97	90.97
TraesCS6D01G149800.1	Wheat	cytosol	90.74	90.74
TraesCS6A01G162300.2	Wheat	cytosol	90.29	90.29
HORVU6Hr1G032610.8	Barley	cytosol	91.2	83.99
HORVU5Hr1G088030.1	Barley	plastid	91.42	79.72
PGSC0003DMT400056033	Potato	cytosol	73.59	74.94
Solyc12g037980.1.1	Tomato	nucleus	72.91	74.25
KRH66446	Soybean	nucleus	74.27	73.93
GSMUA_Achr8P16860_001	Banana	endoplasmic reticulum	78.78	73.78
KRH48882	Soybean	nucleus	73.59	73.09
KRH41617	Soybean	nucleus	69.98	71.93
CDY26159	Canola	cytosol	70.65	70.81
CDY19213	Canola	cytosol	70.43	70.59
CDX83847	Canola	cytosol	69.75	70.39
CDX96721	Canola	cytosol	69.53	70.32
AT1G18450.1	Thale cress	cytosol	69.75	70.07
VIT_17s0000g04010.t01	Wine grape	mitochondrion	58.24	58.37
Os11t0163100-01	Rice	nucleus, plasma membrane, plastid	35.89	42.18
Os03t0836000-01	Rice	plasma membrane, plastid	35.89	42.18
Os10t0510000-01	Rice	plastid	35.67	41.91
Os12t0163700-01	Rice	plastid	34.31	41.87
Os05t0106600-01	Rice	nucleus	35.44	41.64
Os01t0964133-01	Rice	plasma membrane	35.21	41.38
Os05t0438800-01	Rice	plasma membrane, plastid	34.76	40.96
Os03t0718100-01	Rice	plasma membrane	34.76	40.85
Os01t0866100-01	Rice	plasma membrane	13.32	29.06
Os02t0596900-01	Rice	cytosol	25.96	26.87
Os03t0783000-01	Rice	cytosol, nucleus	21.67	26.67
Os08t0128300-01	Rice	cytosol	9.93	24.44
Os01t0269900-01	Rice	cytosol	22.8	23.54

Protein Annotations

MapMan:12.4.6.1	Gene3D:3.30.420.40	Gene3D:3.90.640.10	EntrezGene:4344621	EMBL:AK065561	EMBL:AK101582
InterPro:Actin	ProteinID:BAD03074.1	ProteinID:BAF22868.1	ProteinID:BAT03751.1	EMBL:CM000145	GO:GO:0000003
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737
GO:GO:0006325	GO:GO:0007275	GO:GO:0008150	GO:GO:0009628	GO:GO:0009791	GO:GO:0009987
GO:GO:0016043	GO:GO:0030154	GO:GO:0048235	GO:GO:0048574	EnsemblPlantsGene:Os08g0137200	EnsemblPlants:Os08t0137200-01
PFAM:PF00022	PANTHER:PTHR11937	PANTHER:PTHR11937:SF274	UniProt:Q6ZJW9	SMART:SM00268	SUPFAM:SSF53067
UniParc:UPI0000225FE3	RefSeq:XP_015649887.1	SEG:seg	:	:	:

Description

ARP4Actin/actin-like family protein. (Os08t0137200-01)

Coordinates

chr8:+:2084611..2093678

Molecular Weight (calculated)

48496.6 Da

IEP (calculated)

4.920

GRAVY (calculated)

-0.280

Length

443 amino acids

Sequence
(BLAST)

001: MYGGDEVSAI VIDVGSYSCK AGYAGDDTPK AVFPSVVGSI EQTGETDEAK ADKEAEAASD SKNGAKPMDV DKAKTKRKLY VGQELEFRRD HMEVISPMKD
101: GTVTDWDIVD NIWNHAFRQR LLINPEEHPM LIAEPSTNTG QQREKAAELM FEKYKVPALF LAKNAVLTSF ASGRATSLVV DSGGGSTVVA AVHDGYVLQK
201: SVATSPIGGE FLTDCMMKSL ESKGVVIRPR YSFKKKEVGP GEYKVVDLDL PNTTESYKLY CMRAIASDIK ESVCRVPDTA FDEVAYANVP TTSYELPDGQ
301: TIEVGADRFK IPDILFNPSL SQTIPGVDGF ADSMSVRGLP RMVIDSVNRC DVDIRKELLS SILLSGGSSS ILQLKERLEK EVLEESSGNT RVKVLASGNS
401: VERRFSVWIG GSILASLGSF QQMWFSKAEY EEHGVSYIQR KCP

Best Arabidopsis Sequence Match ( AT1G18450.1 )
(BLAST)

001: MYGGDEVSAI VVDLGSHTCK AGYAGEDAPK AVFPSVIGAV DGVEAMDVDV DSTKTNSNSE DSKTESEKEK SKRKLYVGSQ AMSYRRDHME VLSPIKDGIV
101: SDWDLVDNIW EHAFKSCLMI DPTEHPMLLA EPPLNTQQQR EKAAELMFEK YKVPALFMAK NPVLTSFATG RATSLVVDCG GGSTTISPVH DGYVLQKAVV
201: SSPLGGEFLT DCLLKSLESK GIKIRPRYSF KRKEVRAGEF QVEDVDIPDT TESYKLFCQR MIVGDIKDSI CRVPDTPYDD KSYSNIPTTS YELPDGQTLE
301: IGADRFKVPD VMFNPSIVQT IPGMEKYAEM IPSVRGLPHM VMESINKCDV DIRRELYSSI LLAGGTSSMQ QLKERLEKDL IEESPHSARV KVLASGNTTE
401: RRFSVWIGGS ILASLGSFQQ MWFSKSEYEE HGASYIQRKC P

Arabidopsis Description

ARP4Actin-related protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q84M92]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.