Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G149800.1 | Wheat | cytosol | 98.65 | 98.65 |
| TraesCS6B01G189000.1 | Wheat | cytosol | 97.74 | 97.74 |
| TraesCS5A01G356000.1 | Wheat | cytosol, nucleus | 93.68 | 93.68 |
| Os08t0137200-01 | Rice | nucleus | 90.29 | 90.29 |
| HORVU6Hr1G032610.8 | Barley | cytosol | 96.61 | 88.98 |
| Zm00001d027326_P001 | Maize | cytosol, extracellular, nucleus | 88.49 | 88.49 |
| EER93001 | Sorghum | cytosol | 88.49 | 88.49 |
| PGSC0003DMT400056033 | Potato | cytosol | 70.88 | 72.18 |
| Solyc12g037980.1.1 | Tomato | nucleus | 69.98 | 71.26 |
| KRH66446 | Soybean | nucleus | 71.33 | 71.01 |
| GSMUA_Achr8P16860_001 | Banana | endoplasmic reticulum | 75.17 | 70.4 |
| KRH48882 | Soybean | nucleus | 70.65 | 70.18 |
| KRH41617 | Soybean | nucleus | 67.95 | 69.84 |
| CDY26159 | Canola | cytosol | 67.72 | 67.87 |
| CDY19213 | Canola | cytosol | 67.49 | 67.65 |
| CDX96721 | Canola | cytosol | 66.59 | 67.35 |
| CDX83847 | Canola | cytosol | 66.59 | 67.2 |
| AT1G18450.1 | Thale cress | cytosol | 66.82 | 67.12 |
| VIT_17s0000g04010.t01 | Wine grape | mitochondrion | 57.11 | 57.24 |
| TraesCS3A01G377300.1 | Wheat | cytosol | 34.76 | 40.96 |
| TraesCS4A01G356100.2 | Wheat | cytosol | 34.99 | 40.9 |
| TraesCS5A01G000400.1 | Wheat | golgi | 34.31 | 40.32 |
| TraesCS1A01G274400.1 | Wheat | golgi | 34.09 | 40.16 |
| TraesCS5A01G124300.2 | Wheat | golgi | 35.21 | 38.14 |
| TraesCS1A01G020500.2 | Wheat | cytosol | 34.99 | 38.08 |
| TraesCS4A01G264400.3 | Wheat | cytosol, plastid | 31.38 | 35.46 |
| TraesCS1A01G179000.1 | Wheat | cytosol | 32.73 | 32.22 |
| TraesCS3A01G369400.1 | Wheat | cytosol | 25.73 | 28.5 |
| TraesCS5A01G420600.1 | Wheat | cytosol, nucleus | 21.44 | 26.24 |
| TraesCS6A01G211000.1 | Wheat | cytosol | 24.83 | 25.76 |
| TraesCS7A01G311700.1 | Wheat | cytosol | 24.38 | 24.77 |
| TraesCS2A01G585700.1 | Wheat | cytosol | 23.7 | 24.42 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G162300.2 | EnsemblPlantsGene:TraesCS6A01G162300 | InterPro:Actin | PANTHER:PTHR11937 | PANTHER:PTHR11937:SF274 | PFAM:PF00022 |
| SEG:seg | SMART:SM00268 | SUPFAM:SSF53067 | TIGR:cd00012 | MapMan:12.4.6.1 | : |
Description
No Description!
Coordinates
chr6A:-:157633302..157640853
Molecular Weight (calculated)
48965.2 Da
IEP (calculated)
5.071
GRAVY (calculated)
-0.338
Length
443 amino acids
Sequence
(BLAST)
(BLAST)
001: MYGGDEVSAI VIDVGSYSCK AGYAGDDTPK CVFPSVVGSI EQTGDTDEAK PEKEADSGSD PKNGSKPMDV DKAKTKRKFY LGQELEFRRE HMEVISPLKD
101: GTIIDWEVVD NIWNHAFRRR LLINPEEHPM LIAEPSTNSG QQREKAAELM FEKYKVPALF LAKNAVLTSF ASGRATSLVV DCGGGSTVVS AVHDGYVLQK
201: SAATSPIGGE FLTDCMMKSL ESKGVVIRPK YSFKKKEVRP GDYKVVDLDF PNTTDSYRLY CMRAIASDIK ESVCRVPDTP FDEVAYANVP TTSYELPDGQ
301: TIEVGADRFK IPDILFNPYL SQTIPGIDGF GDSTSIRGFP RMVLDSVNRC DVDIRKELLS NILLSGGSSS ILQIKERLEK EVLEESPQNA RVKVLASGSS
401: MERRFSVWIG GSILASLGSF QQMWFSKAEY EEHGVSYIQR KCP
101: GTIIDWEVVD NIWNHAFRRR LLINPEEHPM LIAEPSTNSG QQREKAAELM FEKYKVPALF LAKNAVLTSF ASGRATSLVV DCGGGSTVVS AVHDGYVLQK
201: SAATSPIGGE FLTDCMMKSL ESKGVVIRPK YSFKKKEVRP GDYKVVDLDF PNTTDSYRLY CMRAIASDIK ESVCRVPDTP FDEVAYANVP TTSYELPDGQ
301: TIEVGADRFK IPDILFNPYL SQTIPGIDGF GDSTSIRGFP RMVLDSVNRC DVDIRKELLS NILLSGGSSS ILQIKERLEK EVLEESPQNA RVKVLASGSS
401: MERRFSVWIG GSILASLGSF QQMWFSKAEY EEHGVSYIQR KCP
001: MYGGDEVSAI VVDLGSHTCK AGYAGEDAPK AVFPSVIGAV DGVEAMDVDV DSTKTNSNSE DSKTESEKEK SKRKLYVGSQ AMSYRRDHME VLSPIKDGIV
101: SDWDLVDNIW EHAFKSCLMI DPTEHPMLLA EPPLNTQQQR EKAAELMFEK YKVPALFMAK NPVLTSFATG RATSLVVDCG GGSTTISPVH DGYVLQKAVV
201: SSPLGGEFLT DCLLKSLESK GIKIRPRYSF KRKEVRAGEF QVEDVDIPDT TESYKLFCQR MIVGDIKDSI CRVPDTPYDD KSYSNIPTTS YELPDGQTLE
301: IGADRFKVPD VMFNPSIVQT IPGMEKYAEM IPSVRGLPHM VMESINKCDV DIRRELYSSI LLAGGTSSMQ QLKERLEKDL IEESPHSARV KVLASGNTTE
401: RRFSVWIGGS ILASLGSFQQ MWFSKSEYEE HGASYIQRKC P
101: SDWDLVDNIW EHAFKSCLMI DPTEHPMLLA EPPLNTQQQR EKAAELMFEK YKVPALFMAK NPVLTSFATG RATSLVVDCG GGSTTISPVH DGYVLQKAVV
201: SSPLGGEFLT DCLLKSLESK GIKIRPRYSF KRKEVRAGEF QVEDVDIPDT TESYKLFCQR MIVGDIKDSI CRVPDTPYDD KSYSNIPTTS YELPDGQTLE
301: IGADRFKVPD VMFNPSIVQT IPGMEKYAEM IPSVRGLPHM VMESINKCDV DIRRELYSSI LLAGGTSSMQ QLKERLEKDL IEESPHSARV KVLASGNTTE
401: RRFSVWIGGS ILASLGSFQQ MWFSKSEYEE HGASYIQRKC P
Arabidopsis Description
ARP4Actin-related protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q84M92]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.