Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G149800.1 | Wheat | cytosol | 89.61 | 97.29 |
| TraesCS6B01G189000.1 | Wheat | cytosol | 89.4 | 97.07 |
| TraesCS6A01G162300.2 | Wheat | cytosol | 88.98 | 96.61 |
| Os08t0137200-01 | Rice | nucleus | 83.99 | 91.2 |
| EER93001 | Sorghum | cytosol | 82.74 | 89.84 |
| Zm00001d027326_P001 | Maize | cytosol, extracellular, nucleus | 82.12 | 89.16 |
| HORVU5Hr1G088030.1 | Barley | plastid | 90.85 | 86.02 |
| PGSC0003DMT400056033 | Potato | cytosol | 66.11 | 73.1 |
| Solyc12g037980.1.1 | Tomato | nucleus | 65.28 | 72.18 |
| KRH66446 | Soybean | nucleus | 66.32 | 71.69 |
| KRH48882 | Soybean | nucleus | 65.9 | 71.08 |
| GSMUA_Achr8P16860_001 | Banana | endoplasmic reticulum | 69.65 | 70.82 |
| KRH41617 | Soybean | nucleus | 63.2 | 70.53 |
| CDY26159 | Canola | cytosol | 63.41 | 69.0 |
| CDY19213 | Canola | cytosol | 63.2 | 68.78 |
| CDX96721 | Canola | cytosol | 62.37 | 68.49 |
| CDX83847 | Canola | cytosol | 62.37 | 68.34 |
| AT1G18450.1 | Thale cress | cytosol | 62.58 | 68.25 |
| VIT_17s0000g04010.t01 | Wine grape | mitochondrion | 52.39 | 57.01 |
| HORVU1Hr1G047440.2 | Barley | cytosol | 32.64 | 41.64 |
| HORVU5Hr1G117900.1 | Barley | cytosol | 32.64 | 41.64 |
| HORVU1Hr1G074350.1 | Barley | cytosol | 31.39 | 40.16 |
| HORVU1Hr1G002840.6 | Barley | plasma membrane | 32.64 | 38.57 |
| HORVU3Hr1G083380.1 | Barley | cytosol | 30.77 | 37.95 |
| HORVU5Hr1G000180.1 | Barley | cytosol, nucleus | 32.02 | 37.65 |
| HORVU4Hr1G008310.9 | Barley | cytosol | 31.6 | 37.35 |
| HORVU5Hr1G039850.3 | Barley | mitochondrion | 32.22 | 33.33 |
| HORVU4Hr1G007240.3 | Barley | cytosol | 24.74 | 25.37 |
| HORVU6Hr1G053910.4 | Barley | cytosol | 22.45 | 24.43 |
| HORVU0Hr1G005770.1 | Barley | cytosol | 21.41 | 23.95 |
| HORVU7Hr1G074460.5 | Barley | cytosol | 21.62 | 23.85 |
| HORVU5Hr1G102220.2 | Barley | plastid | 21.0 | 23.06 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G032610.8 | EnsemblPlantsGene:HORVU6Hr1G032610 | InterPro:Actin | PANTHER:PTHR11937 | PANTHER:PTHR11937:SF274 | PFAM:PF00022 |
| SEG:seg | SMART:SM00268 | SUPFAM:SSF53067 | UniParc:UPI000B4829BD | UniProt:A0A287TU37 | MapMan:12.4.6.1 |
Description
No Description!
Coordinates
chrchr6H:+:143703232..143712206
Molecular Weight (calculated)
53109.1 Da
IEP (calculated)
5.198
GRAVY (calculated)
-0.360
Length
481 amino acids
Sequence
(BLAST)
(BLAST)
001: RIENLEWRVA EQAQRHRRRL DPAAPLLLAE PSLSGSPAMY GGDEVSAIVI DVGSYSCKAG YAGDDTPKCV FPSVVGSIEQ TGDADEAKPE KEADSGSDPK
101: NGSKPMDVDK AKTKRKFYLG QELEFRRDHM EVISPMKDGT VTDWEVVDNI WNHAFRRRLL INPEEHPMLI AEPSTNSGQQ REKAAEVMFE KYKVPALFLA
201: KNAVLTSFAS GRATSLVVDC GGGSTVVSAV HDGYVLQKSV ATSPIGGEFL TDCMMKSLES KGVVIRPKYS FKKKEVSPGD YKVVDLDFPN TTESYRLYCM
301: RAIAGDIKES VCRVPDTPFD EVAYANVPTT SYELPDGQTI EVGADRFKIP DILFNPYLSQ TIPGVDGFGD STSIRGLPRM VLDSINRCDV DIRKELLSNI
401: LLSGGSSSIL QLKERLEKEV LEESPQNARI KVLASGSSME RRFSVWIGGS ILASLGSFQQ MWFSKAEYEE HGVSYIQRKC P
101: NGSKPMDVDK AKTKRKFYLG QELEFRRDHM EVISPMKDGT VTDWEVVDNI WNHAFRRRLL INPEEHPMLI AEPSTNSGQQ REKAAEVMFE KYKVPALFLA
201: KNAVLTSFAS GRATSLVVDC GGGSTVVSAV HDGYVLQKSV ATSPIGGEFL TDCMMKSLES KGVVIRPKYS FKKKEVSPGD YKVVDLDFPN TTESYRLYCM
301: RAIAGDIKES VCRVPDTPFD EVAYANVPTT SYELPDGQTI EVGADRFKIP DILFNPYLSQ TIPGVDGFGD STSIRGLPRM VLDSINRCDV DIRKELLSNI
401: LLSGGSSSIL QLKERLEKEV LEESPQNARI KVLASGSSME RRFSVWIGGS ILASLGSFQQ MWFSKAEYEE HGVSYIQRKC P
001: MYGGDEVSAI VVDLGSHTCK AGYAGEDAPK AVFPSVIGAV DGVEAMDVDV DSTKTNSNSE DSKTESEKEK SKRKLYVGSQ AMSYRRDHME VLSPIKDGIV
101: SDWDLVDNIW EHAFKSCLMI DPTEHPMLLA EPPLNTQQQR EKAAELMFEK YKVPALFMAK NPVLTSFATG RATSLVVDCG GGSTTISPVH DGYVLQKAVV
201: SSPLGGEFLT DCLLKSLESK GIKIRPRYSF KRKEVRAGEF QVEDVDIPDT TESYKLFCQR MIVGDIKDSI CRVPDTPYDD KSYSNIPTTS YELPDGQTLE
301: IGADRFKVPD VMFNPSIVQT IPGMEKYAEM IPSVRGLPHM VMESINKCDV DIRRELYSSI LLAGGTSSMQ QLKERLEKDL IEESPHSARV KVLASGNTTE
401: RRFSVWIGGS ILASLGSFQQ MWFSKSEYEE HGASYIQRKC P
101: SDWDLVDNIW EHAFKSCLMI DPTEHPMLLA EPPLNTQQQR EKAAELMFEK YKVPALFMAK NPVLTSFATG RATSLVVDCG GGSTTISPVH DGYVLQKAVV
201: SSPLGGEFLT DCLLKSLESK GIKIRPRYSF KRKEVRAGEF QVEDVDIPDT TESYKLFCQR MIVGDIKDSI CRVPDTPYDD KSYSNIPTTS YELPDGQTLE
301: IGADRFKVPD VMFNPSIVQT IPGMEKYAEM IPSVRGLPHM VMESINKCDV DIRRELYSSI LLAGGTSSMQ QLKERLEKDL IEESPHSARV KVLASGNTTE
401: RRFSVWIGGS ILASLGSFQQ MWFSKSEYEE HGASYIQRKC P
Arabidopsis Description
ARP4Actin-related protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q84M92]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.