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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 5
  • mitochondrion 1
  • cytoskeleton 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytoskeleton, cytosol, mitochondrion
BaCelLo:cytosol
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytoskeleton
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU1Hr1G002840.6
HORVU1Hr1G048450.4
HORVU1Hr1G074350.1
HORVU1Hr1G080290.6
HORVU1Hr1G094840.9
HORVU3Hr1G004510.1
HORVU3Hr1G021490.1
HORVU3Hr1G050340.1
HORVU3Hr1G067360.1
HORVU3Hr1G067380.4
HORVU5Hr1G039850.3
HORVU5Hr1G100770.1
HORVU5Hr1G117900.1
HORVU7Hr1G029040.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G49240.1 HORVU1Hr1G080290.6 AT1G72770.1 19033529
AT1G49240.1 HORVU1Hr1G094840.9 AT1G72770.1 19033529
AT1G49240.1 HORVU3Hr1G050340.1 AT1G72770.1 19033529
AT1G49240.1 HORVU3Hr1G067360.1 AT1G72770.1 19033529
AT1G49240.1 HORVU3Hr1G067380.4 AT1G72770.1 19033529
AT1G49240.1 HORVU7Hr1G029040.1 AT1G72770.1 19033529
AT5G09810.1 HORVU1Hr1G048450.4 AT2G31200.1 21798944
AT5G09810.1 HORVU5Hr1G100770.1 AT2G31200.1 21798944
AT5G09810.1 HORVU3Hr1G004510.1 AT3G18060.1 21798944
AT5G09810.1 HORVU3Hr1G021490.1 AT3G18060.1 21798944
AT5G09810.1 HORVU1Hr1G002840.6 AT5G09810.1 21798944
AT5G09810.1 HORVU1Hr1G074350.1 AT5G09810.1 21798944
AT5G09810.1 HORVU5Hr1G039850.3 AT5G09810.1 21798944
AT5G09810.1 HORVU5Hr1G117900.1 AT5G09810.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5B01G516100.1 Wheat cytosol 100.0 100.0
TraesCS5D01G516200.1 Wheat cytosol 100.0 100.0
TraesCS4A01G356100.2 Wheat cytosol 100.0 99.47
Os03t0836000-01 Rice plasma membrane, plastid 98.67 98.67
AT5G09810.1 Thale cress cytosol 98.67 98.67
CDY21607 Canola cytosol 98.67 98.67
CDX69885 Canola cytosol 98.67 98.67
CDY30296 Canola cytosol 92.31 98.58
CDY31972 Canola cytosol 92.31 98.58
CDY40061 Canola cytosol 92.31 98.58
CDX85794 Canola cytosol 92.31 98.58
Bra028615.1-P Field mustard cytosol 98.41 98.41
GSMUA_Achr6P25350_001 Banana cytosol 98.41 98.41
Bra009081.1-P Field mustard cytosol 92.04 98.3
CDX81140 Canola cytosol 98.14 98.14
CDY56544 Canola cytosol 98.14 98.14
EER90564 Sorghum cytosol 98.14 98.14
GSMUA_Achr9P08850_001 Banana cytosol 90.72 97.99
VIT_12s0178g00200.t01 Wine grape cytosol 97.88 97.88
Bra006033.1-P Field mustard cytosol 97.88 97.88
GSMUA_Achr9P03170_001 Banana cytosol 97.61 97.87
KRH43389 Soybean cytosol 97.61 97.61
Solyc03g078400.2.1 Tomato nucleus, plastid 97.61 97.61
HORVU1Hr1G047440.2 Barley cytosol 97.61 97.61
PGSC0003DMT400047481 Potato cytosol 97.61 97.61
KRH64098 Soybean cytosol 97.61 97.61
KRH59535 Soybean cytosol 97.61 97.61
KRH53856 Soybean endoplasmic reticulum, mitochondrion 85.94 97.59
GSMUA_Achr6P34320_001 Banana cytosol 63.13 97.54
GSMUA_Achr5P29190_001 Banana cytosol 89.92 97.41
GSMUA_Achr3P02960_001 Banana cytosol 97.35 97.35
GSMUA_Achr8P16150_001 Banana cytosol 97.35 97.35
PGSC0003DMT400010174 Potato cytosol 97.08 97.08
GSMUA_Achr2P16160_001 Banana cytosol 97.08 97.08
Solyc11g005330.1.1 Tomato nucleus 97.08 97.08
GSMUA_Achr8P02660_001 Banana cytosol 97.08 97.08
GSMUA_Achr10P... Banana cytosol 96.82 96.82
Solyc01g104770.2.1 Tomato nucleus 96.82 96.82
GSMUA_Achr7P10410_001 Banana cytosol 96.55 96.55
GSMUA_Achr11P... Banana cytosol 89.12 96.28
PGSC0003DMT400076499 Potato cytosol 48.81 95.34
GSMUA_Achr11P... Banana cytosol 95.23 95.23
KRH43946 Soybean endoplasmic reticulum, mitochondrion, nucleus 94.69 94.69
KRH10484 Soybean endoplasmic reticulum, mitochondrion, nucleus 94.69 94.69
Zm00001d034761_P002 Maize cytosol 98.14 94.39
HORVU1Hr1G074350.1 Barley cytosol 93.37 93.62
Solyc04g071260.2.1 Tomato plastid 92.04 92.04
CDX82326 Canola cytosol 91.78 91.78
AT1G49240.1 Thale cress cytosol 91.78 91.78
CDX99315 Canola cytosol 78.51 91.64
Bra022356.1-P Field mustard cytosol 78.51 91.64
AT3G18780.3 Thale cress cytosol 91.51 91.51
CDX92272 Canola cytosol 91.51 91.51
CDX95498 Canola cytosol 91.51 91.51
CDY18545 Canola cytosol 91.51 91.51
CDY61982 Canola cytosol 91.51 91.51
CDX92271 Canola cytosol 76.39 90.85
HORVU1Hr1G002840.6 Barley plasma membrane 97.88 90.66
PGSC0003DMT400076501 Potato cytosol 47.48 89.5
HORVU5Hr1G000180.1 Barley cytosol, nucleus 96.29 88.75
HORVU4Hr1G008310.9 Barley cytosol 95.76 88.7
GSMUA_Achr10P... Banana cytosol 62.86 86.18
HORVU3Hr1G083380.1 Barley cytosol 88.59 85.64
Bra037560.1-P Field mustard cytoskeleton, cytosol 78.25 83.57
VIT_04s0044g00580.t01 Wine grape extracellular 97.88 80.22
PGSC0003DMT400087294 Potato mitochondrion 56.76 78.1
HORVU5Hr1G039850.3 Barley mitochondrion 93.9 76.13
PGSC0003DMT400022210 Potato cytosol 68.7 70.38
PGSC0003DMT400022205 Potato cytosol 67.11 69.13
PGSC0003DMT400074882 Potato cytosol 67.64 68.92
PGSC0003DMT400074887 Potato cytosol 64.46 65.68
PGSC0003DMT400088088 Potato cytosol 32.63 63.4
HORVU4Hr1G007240.3 Barley cytosol 44.03 35.39
HORVU6Hr1G032610.8 Barley cytosol 41.64 32.64
HORVU6Hr1G053910.4 Barley cytosol 37.14 31.67
HORVU7Hr1G074460.5 Barley cytosol 36.6 31.65
HORVU5Hr1G088030.1 Barley plastid 42.18 31.3
HORVU5Hr1G102220.2 Barley plastid 34.22 29.45
HORVU0Hr1G005770.1 Barley cytosol 32.63 28.6
Protein Annotations
EnsemblPlants:HORVU5Hr1G117900.1EnsemblPlantsGene:HORVU5Hr1G117900Gene3D:3.30.420.40Gene3D:3.90.640.10GO:GO:0000166GO:GO:0003674
GO:GO:0005488GO:GO:0005524InterPro:ActinInterPro:Actin/actin-like_CSInterPro:Actin_CSPANTHER:PTHR11937
PANTHER:PTHR11937:SF252PFAM:PF00022PRINTS:PR00190ScanProsite:PS00406ScanProsite:PS00432ScanProsite:PS01132
SMART:SM00268SUPFAM:SSF53067UniParc:UPI00016EDF02UniProt:M0XGG9MapMan:20.2.1:
Description
No Description!
Coordinates
chrchr5H:+:651481517..651485510
Molecular Weight (calculated)
41623.0 Da
IEP (calculated)
5.162
GRAVY (calculated)
-0.184
Length
377 amino acids
Sequence
(BLAST)
001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDS LMKILTERGY
201: SFTTTAEREI VRDIKEKLAY VALDYEQELE TAKSSSSVEK SYELPDGQVI TIGAERFRCP EVLFQPSLIG MEAPGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIS KGEYDESGPS IVHRKCF
Best Arabidopsis Sequence Match ( AT5G09810.1 )
(BLAST)
001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN VPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDS LMKILTERGY
201: MFTTTAEREI VRDIKEKLAY VALDYEQELE TAKSSSSVEK NYELPDGQVI TIGAERFRCP EVLFQPSLIG MEAPGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGSTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIS KSEYDESGPS IVHRKCF
Arabidopsis Description
ACT7AtACT7 [Source:UniProtKB/TrEMBL;Acc:A0A178UEW4]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.