CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69885
CDX74944
CDX79746
CDX81140
CDX85794
CDX91373
CDX92192
CDX93360
CDX94448
CDY01102
CDY07779
CDY08455
CDY10786
CDY21607
CDY24750
CDY30296
CDY31972
CDY40061
CDY49616
CDY56544
CDY65255

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G09810.1	CDY10786	AT2G31200.1	21798944
AT5G09810.1	CDY24750	AT2G31200.1	21798944
AT5G09810.1	CDX74944	AT2G37620.1	21798944
AT5G09810.1	CDX79746	AT2G37620.1	21798944
AT5G09810.1	CDX91373	AT2G37620.1	21798944
AT5G09810.1	CDX93360	AT2G37620.1	21798944
AT5G09810.1	CDX94448	AT2G37620.1	21798944
AT5G09810.1	CDY07779	AT2G37620.1	21798944
AT5G09810.1	CDY65255	AT2G37620.1	21798944
AT5G09810.1	CDY01102	AT3G12110.1	21798944
AT5G09810.1	CDY08455	AT3G12110.1	21798944
AT5G09810.1	CDX92192	AT3G18060.1	21798944
AT5G09810.1	CDY49616	AT3G18060.1	21798944
AT5G09810.1	CDX69885	AT5G09810.1	21798944
AT5G09810.1	CDX81140	AT5G09810.1	21798944
AT5G09810.1	CDX85794	AT5G09810.1	21798944
AT5G09810.1	CDY21607	AT5G09810.1	21798944
AT5G09810.1	CDY30296	AT5G09810.1	21798944
AT5G09810.1	CDY31972	AT5G09810.1	21798944
AT5G09810.1	CDY40061	AT5G09810.1	21798944
AT5G09810.1	CDY56544	AT5G09810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21607	Canola	cytosol	100.0	100.0
Bra009081.1-P	Field mustard	cytosol	93.37	99.72
AT5G09810.1	Thale cress	cytosol	99.47	99.47
CDX85794	Canola	cytosol	93.1	99.43
CDY30296	Canola	cytosol	93.1	99.43
CDY31972	Canola	cytosol	93.1	99.43
CDY40061	Canola	cytosol	93.1	99.43
CDX81140	Canola	cytosol	98.94	98.94
CDY56544	Canola	cytosol	98.94	98.94
HORVU5Hr1G117900.1	Barley	cytosol	98.67	98.67
TraesCS5B01G516100.1	Wheat	cytosol	98.67	98.67
TraesCS5D01G516200.1	Wheat	cytosol	98.67	98.67
KRH53856	Soybean	endoplasmic reticulum, mitochondrion	86.74	98.49
KRH64098	Soybean	cytosol	98.41	98.41
Os11t0163100-01	Rice	nucleus, plasma membrane, plastid	98.41	98.41
PGSC0003DMT400047481	Potato	cytosol	98.41	98.41
Solyc03g078400.2.1	Tomato	nucleus, plastid	98.41	98.41
TraesCS4A01G356100.2	Wheat	cytosol	98.67	98.15
EES08028	Sorghum	cytosol	97.88	97.88
KRH43389	Soybean	cytosol	97.88	97.88
KRH59535	Soybean	cytosol	97.88	97.88
KXG23031	Sorghum	cytosol	97.88	97.88
PGSC0003DMT400010174	Potato	cytosol	97.88	97.88
Solyc11g005330.1.1	Tomato	nucleus	97.88	97.88
TraesCS5B01G124100.1	Wheat	cytosol	97.88	97.88
GSMUA_Achr6P25350_001	Banana	cytosol	97.61	97.61
Zm00001d053177_P004	Maize	cytosol	97.61	97.61
GSMUA_Achr9P03170_001	Banana	cytosol	97.35	97.61
GSMUA_Achr9P08850_001	Banana	cytosol	90.19	97.42
GSMUA_Achr5P29190_001	Banana	cytosol	89.92	97.41
Os03t0836000-01	Rice	plasma membrane, plastid	97.35	97.35
Os05t0106600-01	Rice	nucleus	97.35	97.35
GSMUA_Achr3P02960_001	Banana	cytosol	97.08	97.08
GSMUA_Achr8P16150_001	Banana	cytosol	97.08	97.08
KXG21029	Sorghum	cytosol	97.08	97.08
TraesCS1B01G024500.1	Wheat	golgi, nucleus	97.08	97.08
TraesCS1D01G020000.1	Wheat	cytosol	97.08	97.08
Zm00001d011086_P005	Maize	cytosol	97.08	97.08
Zm00001d035720_P002	Maize	cytosol	97.08	97.08
EER90564	Sorghum	cytosol	96.82	96.82
GSMUA_Achr2P16160_001	Banana	cytosol	96.82	96.82
GSMUA_Achr6P34320_001	Banana	cytosol	62.6	96.72
GSMUA_Achr10P...	Banana	cytosol	96.55	96.55
GSMUA_Achr7P10410_001	Banana	cytosol	96.29	96.29
GSMUA_Achr8P02660_001	Banana	cytosol	96.29	96.29
Os01t0964133-01	Rice	plasma membrane	96.29	96.29
GSMUA_Achr11P...	Banana	cytosol	89.12	96.28
Zm00001d019635_P001	Maize	cytosol	35.01	95.65
CDX78202	Canola	cytosol	95.49	95.49
CDX76191	Canola	cytosol	95.23	95.23
CDY01102	Canola	cytosol	95.23	95.23
CDX73527	Canola	cytosol	89.12	95.18
Zm00001d035722_P007	Maize	plasma membrane	97.08	95.06
CDX74944	Canola	cytosol	94.96	94.96
CDX91373	Canola	cytosol	94.96	94.96
CDY08455	Canola	cytosol	94.96	94.96
GSMUA_Achr11P...	Banana	cytosol	94.96	94.96
CDX93360	Canola	cytosol	83.29	94.86
CDX71119	Canola	cytosol	94.69	94.69
CDX82985	Canola	cytosol	94.69	94.69
CDX86081	Canola	cytosol	94.69	94.69
CDX88698	Canola	cytosol	94.69	94.69
CDX99111	Canola	cytosol	94.69	94.69
CDY21777	Canola	cytosol	94.69	94.69
CDY30846	Canola	cytosol	94.69	94.69
CDY38066	Canola	cytosol	94.69	94.69
CDY07779	Canola	cytosol	88.33	94.6
CDY65255	Canola	cytosol	83.02	94.56
CDX87810	Canola	cytosol	94.43	94.43
CDY53444	Canola	cytosol	94.43	94.43
Zm00001d012277_P001	Maize	cytosol	93.9	94.15
CDY48688	Canola	cytosol	84.88	94.12
TraesCS5D01G132200.1	Wheat	golgi	92.57	94.07
EES01810	Sorghum	cytosol	93.63	93.88
Os05t0438800-01	Rice	plasma membrane, plastid	93.1	93.35
Zm00001d042731_P002	Maize	extracellular, plasma membrane, plastid	93.1	93.35
Zm00001d034761_P002	Maize	cytosol	96.82	93.11
HORVU1Hr1G074350.1	Barley	cytosol	92.84	93.09
TraesCS1A01G274400.1	Wheat	golgi	92.84	93.09
TraesCS1B01G283900.1	Wheat	cytosol	92.84	93.09
TraesCS1D01G274400.1	Wheat	cytosol	92.84	93.09
Zm00001d016605_P001	Maize	cytosol	38.99	93.04
EES19603	Sorghum	cytosol	92.31	92.55
Zm00001d010159_P002	Maize	extracellular, plasma membrane	92.04	92.29
CDX82326	Canola	cytosol	91.78	91.78
CDX99315	Canola	cytosol	78.51	91.64
CDX92272	Canola	cytosol	91.51	91.51
CDX95498	Canola	cytosol	91.51	91.51
CDY18545	Canola	cytosol	91.51	91.51
CDY61982	Canola	cytosol	91.51	91.51
CDX92271	Canola	cytosol	76.39	90.85
TraesCS5A01G124300.2	Wheat	golgi	97.88	90.22
HORVU1Hr1G002840.6	Barley	plasma membrane	97.08	89.93
TraesCS1A01G020500.2	Wheat	cytosol	97.08	89.93
CDX94448	Canola	cytosol	92.31	89.92
CDX79746	Canola	cytosol	88.33	89.52
GSMUA_Achr10P...	Banana	cytosol	63.13	86.55
Zm00001d016508_P001	Maize	cytosol	31.57	86.23
KXG21030	Sorghum	cytosol	87.8	85.09
Zm00001d008746_P001	Maize	cytosol	61.8	84.73
GSMUA_Achr2P08030_001	Banana	cytosol	77.45	83.43
Zm00001d019396_P001	Maize	cytosol	36.6	82.14
VIT_04s0044g00580.t01	Wine grape	extracellular	98.67	80.87
Zm00001d011087_P001	Maize	plastid	97.08	80.62
Zm00001d007792_P001	Maize	cytosol	55.44	79.17
Zm00001d003298_P001	Maize	cytosol	53.05	76.05
HORVU5Hr1G039850.3	Barley	mitochondrion	93.63	75.91
CDY71336	Canola	cytosol	54.38	74.55
Zm00001d004087_P001	Maize	cytosol	41.11	71.76
CDY14813	Canola	cytosol	66.58	71.51
Os01t0866100-01	Rice	plasma membrane	38.2	70.94
CDY06885	Canola	cytosol	61.8	70.39
CDX67573	Canola	cytosol	55.17	68.42
Zm00001d004855_P002	Maize	cytoskeleton, cytosol, nucleus	96.55	61.69
CDY33033	Canola	nucleus	76.92	53.6
CDX80274	Canola	nucleus	75.6	51.91
CDY00172	Canola	cytosol	44.83	43.44
CDY20066	Canola	cytosol	44.83	43.44
CDY13674	Canola	cytosol	45.09	43.04
CDY52404	Canola	cytosol	45.09	43.04
CDY62715	Canola	cytosol	37.67	39.12
CDX67843	Canola	cytosol	37.14	38.89
CDY56730	Canola	cytosol	37.14	38.89
CDX71774	Canola	cytosol	36.6	38.66
CDX96721	Canola	cytosol	43.24	37.21
CDX83847	Canola	cytosol	43.24	37.13
CDY19213	Canola	cytosol	43.5	37.1
CDY26159	Canola	cytosol	43.5	37.1
Zm00001d034421_P004	Maize	plastid	45.62	36.75
CDY52344	Canola	cytosol	37.4	34.99
CDY21087	Canola	cytosol	38.46	33.96
CDY34585	Canola	cytosol	38.2	33.72
CDX98005	Canola	cytosol	37.93	33.49
CDY19392	Canola	cytosol	37.67	33.26
CDY42404	Canola	cytosol	31.83	28.1

Protein Annotations

MapMan:20.2.1	Gene3D:3.30.420.40	Gene3D:3.90.640.10	GO:A0A078G9C9	UniProt:A0A078G9C9	InterPro:Actin
InterPro:Actin/actin-like_CS	InterPro:Actin_CS	EnsemblPlants:CDX69885	ProteinID:CDX69885	ProteinID:CDX69885.1	ProteinID:CDY21607.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00135952001	PFAM:PF00022
PRINTS:PR00190	ScanProsite:PS00406	ScanProsite:PS00432	ScanProsite:PS01132	PANTHER:PTHR11937	PANTHER:PTHR11937:SF252
SMART:SM00268	SUPFAM:SSF53067	UniParc:UPI00025D8434	:	:	:

Description

BnaA10g22340DBnaA10g22340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G9C9]

Coordinates

chrLK031790:-:2227991..2230270

Molecular Weight (calculated)

41692.2 Da

IEP (calculated)

5.162

GRAVY (calculated)

-0.167

Length

377 amino acids

Sequence
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN VPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDS LMKILTERGY
201: MFTTTAEREI VRDIKEKLAY VALDFEQELE TAKSSSSVEK NYELPDGQVI TIGAERFRCP EVLFQPSLIG MEAPGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGSTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIS KGEYDESGPS IVHRKCF

Best Arabidopsis Sequence Match ( AT5G09810.1 )
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN VPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDS LMKILTERGY
201: MFTTTAEREI VRDIKEKLAY VALDYEQELE TAKSSSSVEK NYELPDGQVI TIGAERFRCP EVLFQPSLIG MEAPGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGSTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIS KSEYDESGPS IVHRKCF

Arabidopsis Description

ACT7AtACT7 [Source:UniProtKB/TrEMBL;Acc:A0A178UEW4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.