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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX89497
CDX90172
CDY00172
CDY05919
CDY08121
CDY13674
CDY13739
CDY20066
CDY25614
CDY43322
CDY52404

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G13180.1 CDX90172 AT1G29170.1 17267444
AT1G13180.1 CDY43322 AT1G29170.1 17267444
AT1G13180.1 CDX89497 AT2G22640.1 17267444
AT1G13180.1 CDY13739 AT2G22640.1 17267444
AT1G13180.1 CDY25614 AT2G22640.1 17267444
AT1G13180.1 CDY00172 AT3G27000.1 17267444
AT1G13180.1 CDY13674 AT3G27000.1 17267444
AT1G13180.1 CDY20066 AT3G27000.1 17267444
AT1G13180.1 CDY52404 AT3G27000.1 17267444
AT1G13180.1 CDY05919 AT3G49290.1 17267444
AT1G13180.1 CDY08121 AT3G49290.1 17267444
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra016738.1-P Field mustard cytosol 99.77 99.77
CDY34585 Canola cytosol 98.13 98.13
CDX98005 Canola cytosol 97.42 97.42
CDY19392 Canola cytosol 97.19 97.19
AT1G13180.1 Thale cress cytosol 94.61 94.61
VIT_01s0137g00280.t01 Wine grape cytosol 85.25 85.05
KRH59228 Soybean nucleus 84.07 83.88
PGSC0003DMT400027956 Potato cytosol 83.14 82.37
Solyc05g013940.2.1 Tomato cytosol 82.44 82.05
Solyc04g024530.2.1 Tomato cytosol 81.73 81.35
GSMUA_Achr6P21120_001 Banana cytosol 80.56 80.56
Os02t0596900-01 Rice cytosol 80.09 79.91
TraesCS6D01G194100.1 Wheat cytosol 79.63 79.63
TraesCS6A01G211000.1 Wheat cytosol 79.63 79.63
TraesCS6B01G240500.1 Wheat cytosol 79.39 79.39
KRH59222 Soybean cytosol 35.36 78.65
GSMUA_Achr9P07630_001 Banana cytosol 78.22 78.04
Zm00001d017106_P001 Maize cytosol 78.45 77.37
KXG30555 Sorghum cytosol 77.52 76.44
GSMUA_Achr2P05970_001 Banana cytosol 31.62 76.27
HORVU6Hr1G053910.4 Barley cytosol 77.28 74.66
Zm00001d050981_P001 Maize cytosol 77.28 71.9
GSMUA_Achr8P01270_001 Banana cytosol 70.26 70.26
GSMUA_Achr2P05960_001 Banana cytosol 50.12 69.93
KXG24330 Sorghum cytosol 71.19 69.89
Zm00001d049629_P002 Maize nucleus 59.25 68.75
TraesCS7A01G311700.1 Wheat cytosol 67.68 66.28
TraesCS7B01G211500.1 Wheat cytosol 67.21 65.83
TraesCS7D01G308200.1 Wheat cytosol 67.68 64.08
HORVU7Hr1G074460.5 Barley cytosol 65.34 63.99
Os08t0128300-01 Rice cytosol 26.46 62.78
Zm00001d008652_P001 Maize endoplasmic reticulum, plastid 29.74 54.98
CDY31972 Canola cytosol 32.08 38.81
CDY30296 Canola cytosol 32.08 38.81
CDY40061 Canola cytosol 32.08 38.81
CDX85794 Canola cytosol 32.08 38.81
CDX99315 Canola cytosol 29.27 38.7
CDY56544 Canola cytosol 33.96 38.46
CDX81140 Canola cytosol 33.96 38.46
CDY21607 Canola cytosol 33.96 38.46
CDX69885 Canola cytosol 33.96 38.46
CDX73527 Canola cytosol 31.62 38.24
CDX82985 Canola cytosol 33.72 38.2
CDY53444 Canola cytosol 33.72 38.2
CDY38066 Canola cytosol 33.72 38.2
CDX86081 Canola cytosol 33.72 38.2
CDY21777 Canola cytosol 33.72 38.2
CDX99111 Canola cytosol 33.72 38.2
CDY01102 Canola cytosol 33.72 38.2
CDY08455 Canola cytosol 33.72 38.2
CDX88698 Canola cytosol 33.72 38.2
CDX71119 Canola cytosol 33.72 38.2
CDX78202 Canola cytosol 33.49 37.93
CDX91373 Canola cytosol 33.49 37.93
CDX74944 Canola cytosol 33.49 37.93
CDX76191 Canola cytosol 33.49 37.93
CDX87810 Canola cytosol 33.49 37.93
CDY30846 Canola cytosol 33.49 37.93
CDY65255 Canola cytosol 29.27 37.76
CDX93360 Canola cytosol 29.27 37.76
CDY07779 Canola cytosol 30.91 37.5
CDX92271 Canola cytosol 27.63 37.22
CDY48688 Canola cytosol 29.51 37.06
CDX82326 Canola cytosol 32.32 36.6
CDX92272 Canola cytosol 32.32 36.6
CDX95498 Canola cytosol 32.32 36.6
CDY61982 Canola cytosol 32.32 36.6
CDY18545 Canola cytosol 32.32 36.6
CDX94448 Canola cytosol 32.55 35.92
CDX79746 Canola cytosol 30.91 35.48
CDY06885 Canola cytosol 26.23 33.84
CDY14813 Canola cytosol 27.17 33.05
CDY00172 Canola cytosol 29.04 31.88
CDY20066 Canola cytosol 29.04 31.88
CDY52404 Canola cytosol 28.81 31.14
CDY13674 Canola cytosol 28.81 31.14
CDX67573 Canola cytosol 20.14 28.29
CDY26159 Canola cytosol 29.27 28.28
CDY19213 Canola cytosol 29.27 28.28
CDX96721 Canola cytosol 28.81 28.08
CDX71774 Canola cytosol 23.42 28.01
CDY71336 Canola cytosol 18.03 28.0
CDY56730 Canola cytosol 23.42 27.78
CDX83847 Canola cytosol 28.34 27.56
CDX67843 Canola cytosol 23.18 27.5
CDY62715 Canola cytosol 23.18 27.27
CDY52344 Canola cytosol 23.89 25.31
CDY42404 Canola cytosol 25.06 25.06
CDY33033 Canola nucleus 27.4 21.63
CDX80274 Canola nucleus 26.7 20.77
Protein Annotations
MapMan:20.2.2.1.2Gene3D:3.30.420.40Gene3D:3.90.640.10UniProt:A0A078G7U6InterPro:ActinInterPro:Arp3
EnsemblPlants:CDY21087ProteinID:CDY21087ProteinID:CDY21087.1GO:GO:0000166GO:GO:0003674GO:GO:0005488
GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005856GO:GO:0005885
GO:GO:0007015GO:GO:0008150GO:GO:0009987GO:GO:0016043GO:GO:0034314EnsemblPlantsGene:GSBRNA2T00015261001
PFAM:PF00022PANTHER:PTHR11937PANTHER:PTHR11937:SF258SMART:SM00268SUPFAM:SSF53067UniParc:UPI0004EDB2D4
SEG:seg:::::
Description
BnaA08g24380DBnaA08g24380D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G7U6]
Coordinates
chrLK032115:+:601245..603943
Molecular Weight (calculated)
47464.4 Da
IEP (calculated)
5.092
GRAVY (calculated)
-0.235
Length
427 amino acids
Sequence
(BLAST)
001: MDPTSQPAVV IDNGTGYTKM GFAGNVEPCF ILPSVVAANE SFLSQPKSSL KGTWAAQHNA GVAADMDFFI GDEALAKSRS SSTYNLRYPI EHGQVEDWDA
101: MERYWQQCVF NYLRCDPEDH YFLLTESPLT PPESREYTGE ILFETFNVPG LYIAVNSVLA LAAGYTTSKC EMTGVVVDVG DGATRVVPVA EGYVIASCIK
201: SIPIAGKDVT LFIQQLMRER GENIPPEDSF DVARKVKEMY CYTCSDIVKE YNKHDKEPGK YIKQWKGVKP KTGAPYTCDV GYERFLGPEV FFNPEIYSND
301: FITSLPAVID KCIQSAPIDT RRALYKNIVL SGGSTMFKDF GRRLQRDLKK IVDARVLANN ARTGGEITSQ PVEVNVVSHP VQKFAVWFGG SVLSSTPEFF
401: ASCRTKEEYE ECGASICRTN PVFKGMY
Best Arabidopsis Sequence Match ( AT1G13180.1 )
(BLAST)
001: MDPTSRPAIV IDNGTGYTKM GFAGNVEPCF ILPTVVAVNE SFLNQSKSSS KATWQTQHNA GVAADLDFYI GDEALAKSRS SSTHNLHYPI EHGQVEDWDA
101: MERYWQQCIF NYLRCDPEDH YFLLTESPLT PPESREYTGE ILFETFNVPG LYIAVNSVLA LAAGYTTSKC EMTGVVVDVG DGATHVVPVA EGYVIGSCIK
201: SIPIAGKDVT LFIQQLMRER GENIPPEDSF DVARKVKEMY CYTCSDIVKE FNKHDKEPAK YIKQWKGVKP KTGAPYTCDV GYERFLGPEV FFNPEIYSND
301: FTTTLPAVID KCIQSAPIDT RRALYKNIVL SGGSTMFKDF GRRLQRDLKK IVDARVLANN ARTGGEITSQ PVEVNVVSHP VQRFAVWFGG SVLSSTPEFF
401: ASCRTKEEYE EYGASICRTN PVFKGMY
Arabidopsis Description
ARP3Actin-related protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAF1]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.