CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018210.1-P	Field mustard	cytosol	100.0	100.0
CDX71119	Canola	cytosol	100.0	100.0
CDX88698	Canola	cytosol	100.0	100.0
CDX86081	Canola	cytosol	100.0	100.0
CDY21777	Canola	cytosol	99.73	99.73
CDX82985	Canola	cytosol	99.73	99.73
AT3G46520.2	Thale cress	cytosol	99.47	99.47
CDY53444	Canola	cytosol	99.47	99.47
CDY38066	Canola	cytosol	99.47	99.47
CDY48688	Canola	cytosol	89.66	99.41
VIT_13s0019g01240.t01	Wine grape	cytosol	97.08	97.08
KRH38098	Soybean	cytosol	97.08	97.08
KRH10268	Soybean	mitochondrion, nucleus	97.08	97.08
CDX74944	Canola	cytosol	96.82	96.82
KRH71847	Soybean	endoplasmic reticulum, nucleus	96.82	96.82
CDX91373	Canola	cytosol	96.82	96.82
CDX78202	Canola	cytosol	96.82	96.82
CDX73527	Canola	cytosol	90.45	96.6
CDX76191	Canola	cytosol	96.55	96.55
KRH23061	Soybean	endoplasmic reticulum, mitochondrion, nucleus	96.55	96.55
KRH67068	Soybean	endoplasmic reticulum, mitochondrion, nucleus	96.29	96.29
KRH70465	Soybean	mitochondrion, nucleus	96.29	96.29
KRH29804	Soybean	endoplasmic reticulum, mitochondrion, nucleus	96.29	96.29
KRG95386	Soybean	cytosol	96.29	96.29
KRH01660	Soybean	mitochondrion, nucleus	96.29	96.29
CDY65255	Canola	cytosol	84.35	96.07
CDY07779	Canola	cytosol	89.66	96.02
KRH56507	Soybean	endoplasmic reticulum, mitochondrion	96.02	96.02
CDY30846	Canola	cytosol	96.02	96.02
CDY01102	Canola	cytosol	96.02	96.02
VIT_08s0007g06520.t01	Wine grape	cytosol	96.02	96.02
VIT_06s0004g04570.t01	Wine grape	cytosol	95.76	96.01
GSMUA_Achr10P...	Banana	cytosol	66.84	95.82
CDX93360	Canola	cytosol	84.08	95.77
CDY08455	Canola	cytosol	95.76	95.76
KRG93168	Soybean	mitochondrion, nucleus	95.76	95.76
GSMUA_AchrUn_...	Banana	plasma membrane	95.76	95.76
CDX69885	Canola	cytosol	94.69	94.69
CDY21607	Canola	cytosol	94.69	94.69
CDY31972	Canola	cytosol	88.33	94.33
CDY40061	Canola	cytosol	88.33	94.33
CDY30296	Canola	cytosol	88.33	94.33
CDX85794	Canola	cytosol	88.33	94.33
CDY56544	Canola	cytosol	94.16	94.16
CDX81140	Canola	cytosol	94.16	94.16
Solyc10g086460.1.1	Tomato	unclear	94.16	94.16
PGSC0003DMT400049429	Potato	cytosol	93.9	93.9
PGSC0003DMT400023026	Potato	cytosol	93.37	93.37
GSMUA_Achr7P18630_001	Banana	cytosol	77.98	91.88
CDX87810	Canola	cytosol	91.78	91.78
CDX94448	Canola	cytosol	93.63	91.21
CDX79746	Canola	cytosol	89.66	90.86
CDY18545	Canola	cytosol	90.72	90.72
CDX95498	Canola	cytosol	90.72	90.72
CDX92272	Canola	cytosol	90.72	90.72
CDY61982	Canola	cytosol	90.72	90.72
CDX99315	Canola	cytosol	77.72	90.71
CDX82326	Canola	cytosol	90.45	90.45
CDX92271	Canola	cytosol	75.6	89.91
Solyc09g010750.1.1	Tomato	cytosol	40.32	84.92
KRH24799	Soybean	cytosol	92.04	84.63
CDY71336	Canola	cytosol	55.17	75.64
CDY14813	Canola	cytosol	66.05	70.94
CDY06885	Canola	cytosol	61.54	70.09
CDX67573	Canola	cytosol	55.7	69.08
CDY33033	Canola	nucleus	81.7	56.93
CDX80274	Canola	nucleus	80.37	55.19
CDY00172	Canola	cytosol	44.03	42.67
CDY20066	Canola	cytosol	44.03	42.67
CDY52404	Canola	cytosol	44.3	42.28
CDY13674	Canola	cytosol	44.3	42.28
CDY62715	Canola	cytosol	37.67	39.12
CDY56730	Canola	cytosol	37.14	38.89
CDX67843	Canola	cytosol	37.14	38.89
CDX71774	Canola	cytosol	36.34	38.38
CDX83847	Canola	cytosol	42.44	36.45
CDY26159	Canola	cytosol	42.71	36.43
CDY19213	Canola	cytosol	42.71	36.43
CDX96721	Canola	cytosol	42.18	36.3
CDY52344	Canola	cytosol	37.67	35.24
CDY21087	Canola	cytosol	38.2	33.72
CDY34585	Canola	cytosol	37.93	33.49
CDX98005	Canola	cytosol	37.67	33.26
CDY19392	Canola	cytosol	37.4	33.02
CDY42404	Canola	cytosol	31.03	27.4

Protein Annotations

EnsemblPlants:CDX99111	EnsemblPlantsGene:GSBRNA2T00107263001	Gene3D:3.30.420.40	Gene3D:3.90.640.10	GO:A0A078D9Z6	InterPro:Actin
InterPro:Actin/actin-like_CS	InterPro:Actin_CS	PANTHER:PTHR11937	PANTHER:PTHR11937:SF276	PFAM:PF00022	PRINTS:PR00190
ProteinID:CDX99111	ProteinID:CDX99111.1	ScanProsite:PS00406	ScanProsite:PS00432	ScanProsite:PS01132	SMART:SM00268
SUPFAM:SSF53067	UniParc:UPI000253F550	MapMan:20.2.1	:	:	:

Description

BnaA06g18020D

Coordinates

chrLK031908:-:403028..405045

Molecular Weight (calculated)

41809.2 Da

IEP (calculated)

5.050

GRAVY (calculated)

-0.216

Length

377 amino acids

Sequence
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN TPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDY LMKILTERGY
201: SFTTTAEREI VRDMKEKLSY IALDYEQELE TSNTSSSVEK SFELPDGQVI TIGAERFRCP EVLFQPSMIG MENPGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFGG IGDRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF

Best Arabidopsis Sequence Match ( AT3G46520.2 )
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN TPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDH LMKILTERGY
201: SFTTTAEREI VRDMKEKLSY IALDYEQELE TSKTSSSVEK SFELPDGQVI TIGAERFRCP EVLFQPSMIG MENPGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFGG IGDRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF

Arabidopsis Description

ACT12Actin-12 [Source:UniProtKB/Swiss-Prot;Acc:P53497]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.