Factsheet for GSMUA_AchrUn_randomP01440_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 4
nucleus 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr2P08220_001
GSMUA_Achr7P18630_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37620.1	GSMUA_Achr11P...	AT2G23420.1	21798944
AT2G37620.1	GSMUA_Achr2P08220_001	AT2G23420.1	21798944
AT2G37620.1	GSMUA_Achr10P...	AT2G37620.1	21798944
AT2G37620.1	GSMUA_Achr7P18630_001	AT2G37620.1	21798944
AT2G37620.1	GSMUA_AchrUn_...	AT2G37620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P20240_001	Banana	cytosol	79.58	100.0
GSMUA_Achr6P02480_001	Banana	cytosol	78.25	99.33
GSMUA_Achr10P...	Banana	cytosol	68.97	98.86
VIT_06s0004g04570.t01	Wine grape	cytosol	98.14	98.4
AT3G53750.2	Thale cress	cytosol	98.14	98.14
AT2G37620.1	Thale cress	cytosol	98.14	98.14
CDX76191	Canola	cytosol	97.88	97.88
KRH10268	Soybean	mitochondrion, nucleus	97.88	97.88
Bra014865.1-P	Field mustard	cytosol	97.88	97.88
GSMUA_Achr9P08850_001	Banana	cytosol	90.45	97.71
Bra007025.1-P	Field mustard	cytosol	97.61	97.61
KRH29804	Soybean	endoplasmic reticulum, mitochondrion, nucleus	97.61	97.61
KRH38098	Soybean	cytosol	97.61	97.61
CDX78202	Canola	cytosol	97.61	97.61
VIT_08s0007g06520.t01	Wine grape	cytosol	97.61	97.61
GSMUA_Achr4P31250_001	Banana	cytosol	97.61	97.61
CDX73527	Canola	cytosol	91.25	97.45
GSMUA_Achr2P15150_001	Banana	cytosol	90.19	97.42
GSMUA_Achr3P02960_001	Banana	cytosol	97.35	97.35
CDY30846	Canola	cytosol	97.35	97.35
GSMUA_Achr8P02660_001	Banana	cytosol	97.35	97.35
GSMUA_Achr8P16150_001	Banana	cytosol	97.35	97.35
KRH23061	Soybean	endoplasmic reticulum, mitochondrion, nucleus	97.35	97.35
KRH71847	Soybean	endoplasmic reticulum, nucleus	97.35	97.35
Bra000010.1-P	Field mustard	cytosol	97.35	97.35
GSMUA_Achr5P29190_001	Banana	cytosol	89.66	97.13
KRG95386	Soybean	cytosol	97.08	97.08
Bra017166.1-P	Field mustard	cytosol	97.08	97.08
GSMUA_Achr6P25350_001	Banana	cytosol	97.08	97.08
KRH67068	Soybean	endoplasmic reticulum, mitochondrion, nucleus	97.08	97.08
GSMUA_Achr10P...	Banana	cytosol	97.08	97.08
CDY65255	Canola	cytosol	85.15	96.98
CDY07779	Canola	cytosol	90.45	96.88
GSMUA_Achr2P16160_001	Banana	cytosol	96.82	96.82
VIT_13s0019g01240.t01	Wine grape	cytosol	96.82	96.82
GSMUA_Achr9P03170_001	Banana	cytosol	96.55	96.81
GSMUA_Achr10P...	Banana	cytosol	84.35	96.66
GSMUA_Achr11P...	Banana	cytosol	89.39	96.56
AT3G12110.1	Thale cress	cytosol	96.55	96.55
CDX74944	Canola	cytosol	96.55	96.55
CDX91373	Canola	cytosol	96.55	96.55
KRH56507	Soybean	endoplasmic reticulum, mitochondrion	96.55	96.55
CDX93360	Canola	cytosol	84.62	96.37
KRH01660	Soybean	mitochondrion, nucleus	96.29	96.29
GSMUA_Achr7P10410_001	Banana	cytosol	96.29	96.29
Bra034778.1-P	Field mustard	cytosol	96.29	96.29
KRG93168	Soybean	mitochondrion, nucleus	96.29	96.29
CDY01102	Canola	cytosol	96.29	96.29
KRH70465	Soybean	mitochondrion, nucleus	96.29	96.29
Bra033819.1-P	Field mustard	cytosol	96.02	96.02
CDY08455	Canola	cytosol	96.02	96.02
AT3G46520.2	Thale cress	cytosol	96.02	96.02
CDX82985	Canola	cytosol	96.02	96.02
GSMUA_Achr6P34320_001	Banana	cytosol	62.07	95.9
Bra005178.1-P	Field mustard	cytosol	89.92	95.76
Bra018210.1-P	Field mustard	cytosol	95.76	95.76
Bra019486.1-P	Field mustard	cytosol	95.76	95.76
CDY38066	Canola	cytosol	95.76	95.76
CDX71119	Canola	cytosol	95.76	95.76
AT5G59370.2	Thale cress	cytosol	95.76	95.76
CDY21777	Canola	cytosol	95.76	95.76
GSMUA_Achr1P05990_001	Banana	plasma membrane	95.76	95.76
CDX99111	Canola	cytosol	95.76	95.76
CDX88698	Canola	cytosol	95.76	95.76
CDX86081	Canola	cytosol	95.76	95.76
CDY53444	Canola	cytosol	95.76	95.76
Bra020319.1-P	Field mustard	cytosol	86.21	95.59
CDY48688	Canola	cytosol	86.21	95.59
PGSC0003DMT400049429	Potato	cytosol	95.23	95.23
Bra006719.1-P	Field mustard	cytosol	83.82	95.18
Solyc10g086460.1.1	Tomato	unclear	94.96	94.96
PGSC0003DMT400023026	Potato	cytosol	94.96	94.96
GSMUA_Achr11P...	Banana	cytosol	94.96	94.96
GSMUA_Achr1P20200_001	Banana	cytosol	87.0	94.52
GSMUA_Achr7P18630_001	Banana	cytosol	80.11	94.38
CDX94448	Canola	cytosol	94.43	91.99
Bra003156.1-P	Field mustard	cytosol	50.13	91.75
CDX79746	Canola	cytosol	90.45	91.67
Solyc09g010750.1.1	Tomato	cytosol	41.64	87.71
GSMUA_Achr10P...	Banana	cytosol	63.4	86.91
KRH24799	Soybean	cytosol	93.1	85.61
GSMUA_Achr2P08030_001	Banana	cytosol	76.92	82.86
CDY71336	Canola	cytosol	56.5	77.45
CDX67573	Canola	cytosol	57.03	70.72
Bra002571.1-P	Field mustard	nucleus	95.49	59.5
CDY33033	Canola	nucleus	77.98	54.34
CDX80274	Canola	nucleus	76.66	52.64
GSMUA_AchrUn_...	Banana	cytosol	45.89	44.47
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	27.85	36.08
GSMUA_Achr2P05970_001	Banana	cytosol	16.18	34.46
GSMUA_Achr8P01270_001	Banana	cytosol	38.99	34.43
GSMUA_Achr9P07630_001	Banana	cytosol	38.46	33.88
GSMUA_Achr6P21120_001	Banana	cytosol	38.2	33.72
GSMUA_Achr8P16860_001	Banana	endoplasmic reticulum	42.18	33.62
GSMUA_Achr2P05960_001	Banana	cytosol	23.87	29.41
GSMUA_AchrUn_...	Banana	cytosol	33.16	28.74

Protein Annotations

MapMan:20.2.1	Gene3D:3.30.420.40	Gene3D:3.90.640.10	InterPro:Actin	InterPro:Actin/actin-like_CS	InterPro:Actin_CS
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSMUA_AchrUn_randomG01440_001	EnsemblPlants:GSMUA_AchrUn_randomP01440_001
EnsemblPlants:GSMUA_AchrUn_randomT01440_001	UniProt:M0U5F6	PFAM:PF00022	PRINTS:PR00190	ScanProsite:PS00406	ScanProsite:PS00432
ScanProsite:PS01132	PANTHER:PTHR11937	PANTHER:PTHR11937:SF355	SMART:SM00268	SUPFAM:SSF53067	UniParc:UPI0002966563

Description

Actin [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG01440_001]

Coordinates

chrchrUn_random:-:5651780..5655961

Molecular Weight (calculated)

41682.2 Da

IEP (calculated)

5.162

GRAVY (calculated)

-0.159

Length

377 amino acids

Sequence
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLAY IALDYEQELE MAKTSSSVEK NYELPDGQVI TIGAERFRCP EVLFQPSMIG MEAAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGSTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF

Best Arabidopsis Sequence Match ( AT2G37620.4 )
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF

Arabidopsis Description

ACT1Actin-3 [Source:UniProtKB/Swiss-Prot;Acc:P0CJ47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.