Factsheet for GSMUA_AchrUn_randomP02700_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P26510_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G33520.1	GSMUA_Achr3P26510_001	AT3G12810.1	17142478
AT3G33520.1	GSMUA_Achr3P26510_001	AT3G12810.1	17470967
AT3G33520.1	GSMUA_AchrUn_...	AT5G37055.1	17142478
AT3G33520.1	GSMUA_AchrUn_...	AT5G37055.1	17470967

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d024059_P002	Maize	cytosol	72.64	73.49
TraesCS2B01G597500.1	Wheat	cytosol	72.64	73.49
TraesCS2A01G585700.1	Wheat	cytosol	72.64	73.49
HORVU0Hr1G005770.1	Barley	cytosol	72.64	73.49
OQU79631	Sorghum	cytosol	72.64	73.15
TraesCS2D01G600800.1	Wheat	cytosol	72.18	73.02
TraesCS1B01G333100.1	Wheat	cytosol	72.18	73.02
Os01t0269900-01	Rice	cytosol	71.72	72.73
VIT_11s0016g05490.t01	Wine grape	cytosol	70.34	70.67
KRH61849	Soybean	cytosol, nucleus	68.05	67.89
Solyc05g018600.2.1	Tomato	cytosol	67.36	66.89
PGSC0003DMT400038724	Potato	cytosol	66.67	66.21
Bra030818.1-P	Field mustard	cytosol	33.56	65.77
AT3G33520.1	Thale cress	cytosol	61.61	63.66
CDY42404	Canola	cytosol	61.38	62.53
GSMUA_Achr10P...	Banana	cytosol	22.3	35.27
GSMUA_Achr6P34320_001	Banana	cytosol	19.77	35.25
GSMUA_Achr1P20200_001	Banana	cytosol	27.13	34.01
GSMUA_Achr2P16160_001	Banana	cytosol	29.43	33.95
GSMUA_Achr1P05990_001	Banana	plasma membrane	29.43	33.95
GSMUA_Achr7P10410_001	Banana	cytosol	29.43	33.95
GSMUA_Achr9P03170_001	Banana	cytosol	29.2	33.78
GSMUA_Achr8P16150_001	Banana	cytosol	29.2	33.69
GSMUA_Achr6P25350_001	Banana	cytosol	28.97	33.42
GSMUA_Achr8P02660_001	Banana	cytosol	28.97	33.42
GSMUA_Achr3P02960_001	Banana	cytosol	28.97	33.42
GSMUA_Achr10P...	Banana	cytosol	28.74	33.16
GSMUA_AchrUn_...	Banana	plasma membrane	28.74	33.16
GSMUA_Achr10P...	Banana	cytosol	25.06	33.13
GSMUA_Achr11P...	Banana	cytosol	28.51	32.89
GSMUA_Achr4P31250_001	Banana	cytosol	28.51	32.89
GSMUA_Achr2P08030_001	Banana	cytosol	26.44	32.86
GSMUA_Achr3P20240_001	Banana	cytosol	22.53	32.67
GSMUA_Achr5P29190_001	Banana	cytosol	25.75	32.18
GSMUA_Achr11P...	Banana	cytosol	25.75	32.09
GSMUA_Achr9P08850_001	Banana	cytosol	25.75	32.09
GSMUA_Achr6P02480_001	Banana	cytosol	21.38	31.31
GSMUA_Achr7P18630_001	Banana	cytosol	22.99	31.25
GSMUA_Achr2P15150_001	Banana	cytosol	25.06	31.23
GSMUA_Achr10P...	Banana	cytosol	18.85	31.18
GSMUA_AchrUn_...	Banana	cytosol	23.45	26.22
GSMUA_Achr6P21120_001	Banana	cytosol	24.14	24.59
GSMUA_Achr9P07630_001	Banana	cytosol	23.68	24.07
GSMUA_Achr8P01270_001	Banana	cytosol	22.3	22.72
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	14.94	22.34
GSMUA_Achr2P05970_001	Banana	cytosol	8.97	22.03
GSMUA_Achr8P16860_001	Banana	endoplasmic reticulum	23.91	21.99
GSMUA_Achr2P05960_001	Banana	cytosol	15.4	21.9

Protein Annotations

Gene3D:3.30.420.40	Gene3D:3.90.640.10	MapMan:35.1	InterPro:Actin	InterPro:Arp6	GO:GO:0000003
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006338
GO:GO:0006355	GO:GO:0006950	GO:GO:0006970	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0008283	GO:GO:0009058	GO:GO:0009266	GO:GO:0009628	GO:GO:0009791	GO:GO:0009845
GO:GO:0009908	GO:GO:0009910	GO:GO:0009987	GO:GO:0016043	EnsemblPlantsGene:GSMUA_AchrUn_randomG02700_001	EnsemblPlants:GSMUA_AchrUn_randomP02700_001
EnsemblPlants:GSMUA_AchrUn_randomT02700_001	UniProt:M0U5T2	PFAM:PF00022	PANTHER:PTHR11937	PANTHER:PTHR11937:SF47	SMART:SM00268
SUPFAM:SSF53067	UniParc:UPI00029589E5	:	:	:	:

Description

Actin-related protein 6 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG02700_001]

Coordinates

chrchrUn_random:+:12946195..12957746

Molecular Weight (calculated)

48850.3 Da

IEP (calculated)

6.199

GRAVY (calculated)

-0.267

Length

435 amino acids

Sequence
(BLAST)

001: MSKGSAVVID NGAGLCKAGF GGDMDPIAVV PNSLGRSANS KRWLVADELR AADADVTSVS LRRPFDRGYL VNPDLQREVW ERVLRTLLRV DPARSSLLLV
101: EPLFNPLAAQ RTTDEIVFED LGFRSLCVAD SPSLVHLYEA SRRTDCQSHS QCSLVVDCGF SFTHAAPVVH NFTLNYGVRR LDLGGKALTN YLKELVSYRS
201: VNLMEETLII DHAKEKLCFV SLDVPRDLRV ARRSGKDNPF KCTYVLPDGI EHTKGYVKDF DEARRYLSLP YESSSTDSGL KEEMSPSQHN AEKSVEQRRI
301: DLTQNEFTLT NERFLVPEML FRPSDLGMNQ AGLAECIVRA VNACHPLLHP VLFESIILTG GSSLFPRFAE RLERDLRPLV PDDYQVKITS QEDPILGVWR
401: GGSLLASSPE FESMCITKSE YEEIGSPRCR RRFFH

Best Arabidopsis Sequence Match ( AT3G33520.1 )
(BLAST)

001: MSNIVVLDNG GGLIKAGQGG ERDPTTVIPN CLYKPLSSKK FIHPSPLTTL SDEIDLTSAA VRRPIDRGYL INSDLQREIW SHLFTSLLHI APSSSSLLLT
101: EAPLSIPSVQ RTTDELVFED FGFSSLYIAH PQSLVHLYEA SRQPDSILSK TQCSLVVDCG FSFTHAVPVL HNFTLNHAIK RIDLGGKAFT NYLKELVSYR
201: SINVMDETFL VDDAKEKLCF VSLDLLRDLR LARNGNTLIK STYVLPDGVT HTKGYVKDPQ AAKRFLSLSE KESVVVMDKV GERKKADMNK NEIDLTNERF
301: LVPETLFQPA DLGMNQAGLA ECIVRAINSC HSYLQPVLYQ SIILTGGSTL FPQLKERLEG ELRPLVPDHF DVKITTQEDP ILGVWRGGSL LASSPDFESM
401: CVTKAEYEEL GSARCRRRFF H

Arabidopsis Description

ARP6SUF3 [Source:UniProtKB/TrEMBL;Acc:A0A178U6Y1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.