Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os02t0689800-01 | Rice | nucleus | 31.9 | 48.69 |
| VIT_08s0007g06370.t01 | Wine grape | nucleus | 57.1 | 45.27 |
| KRH71872 | Soybean | nucleus | 55.19 | 44.0 |
| OQU85588 | Sorghum | nucleus | 54.52 | 43.76 |
| KRH38118 | Soybean | nucleus | 54.89 | 43.58 |
| Solyc03g063220.1.1 | Tomato | nucleus | 41.86 | 42.35 |
| Zm00001d017660_P021 | Maize | nucleus | 53.6 | 42.29 |
| Zm00001d051507_P007 | Maize | nucleus | 53.23 | 42.02 |
| CDY08401 | Canola | nucleus | 51.2 | 41.55 |
| CDY52874 | Canola | nucleus | 51.44 | 41.5 |
| Bra034727.1-P | Field mustard | nucleus | 51.26 | 41.31 |
| TraesCS7A01G544700.1 | Wheat | nucleus | 54.21 | 40.91 |
| TraesCS7D01G531100.1 | Wheat | nucleus | 54.39 | 40.76 |
| AT3G12810.1 | Thale cress | nucleus | 51.38 | 40.68 |
| TraesCS7B01G468100.1 | Wheat | nucleus | 54.27 | 40.67 |
| GSMUA_Achr3P26090_001 | Banana | cytosol | 9.4 | 20.16 |
| GSMUA_AchrUn_... | Banana | cytosol | 5.22 | 17.53 |
| GSMUA_Achr4P25930_001 | Banana | cytosol | 8.67 | 17.47 |
| GSMUA_Achr8P09960_001 | Banana | nucleus | 11.12 | 16.74 |
| GSMUA_Achr3P23910_001 | Banana | nucleus | 10.63 | 16.18 |
| GSMUA_Achr8P00120_001 | Banana | nucleus | 12.54 | 13.95 |
| GSMUA_Achr4P21270_001 | Banana | cytosol | 11.19 | 13.2 |
| GSMUA_Achr6P20210_001 | Banana | nucleus | 11.19 | 12.41 |
| GSMUA_Achr8P06840_001 | Banana | nucleus | 9.53 | 11.23 |
| GSMUA_Achr8P29610_001 | Banana | nucleus | 11.25 | 10.89 |
| GSMUA_Achr6P02430_001 | Banana | cytosol | 5.72 | 10.3 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus | 2.09 | 10.24 |
| GSMUA_Achr9P11210_001 | Banana | nucleus | 12.17 | 9.62 |
| GSMUA_Achr6P29570_001 | Banana | nucleus | 12.48 | 9.48 |
| GSMUA_AchrUn_... | Banana | nucleus, plastid | 12.23 | 8.93 |
| GSMUA_Achr1P24350_001 | Banana | nucleus | 11.55 | 8.82 |
| GSMUA_AchrUn_... | Banana | nucleus | 11.43 | 8.67 |
Protein Annotations
| Gene3D:1.10.10.60 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | MapMan:35.1 | ncoils:Coil | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 |
| GO:GO:0005618 | GO:GO:0005623 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009605 | GO:GO:0009607 |
| GO:GO:0030312 | GO:GO:0042742 | GO:GO:0046686 | EnsemblPlantsGene:GSMUA_Achr3G26510_001 | EnsemblPlants:GSMUA_Achr3P26510_001 | EnsemblPlants:GSMUA_Achr3T26510_001 |
| InterPro:HSA_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:Homeobox-like_sf | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:IPR014012 | InterPro:IPR017877 | InterPro:IPR038718 | UniProt:M0SI17 | InterPro:Myb-like_dom | InterPro:P-loop_NTPase |
| PFAM:PF00176 | PFAM:PF00271 | PFAM:PF07529 | PFAM:PF13921 | PFscan:PS50090 | PFscan:PS51192 |
| PFscan:PS51194 | PFscan:PS51204 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF935 | SMART:SM00487 | SMART:SM00573 |
| InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF46689 | SUPFAM:SSF52540 | UniParc:UPI000296CEDD | SEG:seg |
Description
helicase conserved C-terminal domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G26510_001]
Coordinates
chr3:+:26319460..26337922
Molecular Weight (calculated)
185643.0 Da
IEP (calculated)
5.057
GRAVY (calculated)
-0.610
Length
1627 amino acids
Sequence
(BLAST)
(BLAST)
0001: MASKGPRSKL DHETRARRQK ALEVPKEPPR PKTHWDHVIE EMVWLSKDFE SERKWKLAQA KKVAIRASKS VLDYATRGEK KVKEEEQRLK KVALNISKDV
0101: KKFWIKIEKL VLYKFQLDVE ERKKKALDKQ LDFLLGQTER YSTMLAENLV DVHYSSRTED MGLKMEQDAH VECKSTDAPE GRAPLNNGSN CQEKLGAIFL
0201: NQIDPIKLDE SLNDGGDQGS QFRTASSPCT DEKSSTTSRP HRRRQGGGDI LSVVSSKGGQ RRIGIVEGER CRIFRQQMYL IGSLGVLTWF SSITFSEDDE
0301: CTIEEDEAQI TEEERREELT ALKAEADLPL EELLKFYAKD NCKLKIFDVC LINSDSFSDF AEYLNQVNGE NVKHHSAENN HVQQDFGQPH NRESNGDSFS
0401: FRGQLTIKKL QPKLCSENLD LCDMEHSTLG PSDDLDDRDY TAASEEKDDE TTLSEEEELA KKEEVNPLEE RYSLDCEIKS LKEESEMPVE ELVARYNKDL
0501: CIDDGMKKSD FSSSSTDDQP ENKTQNLKMI DGEYQEDKSP YQNELDSSVY KEIKTDCDNI MDGREMRTKF PFLLKHPLRE YQHIGLDWLV TMYEKRLNGI
0601: LADEMGLGKT IMTIALLAHL ACDKGIWGPH LIVVPTSVML NWETEFLKWC PAFKILTLVI QDSKSHQEFK DCSETQATLA SSNFFGMISV IMQLRKVCNH
0701: PDLFEGLDLC GLNFKPVYGT DLRKLVTIKH PVFDILEQKN NPSFECFMFA IPASRAPFPV CWCSKVYFPD RRLIQFDCGK LQELAILLRR LKAEGHRALI
0801: FTQMTKMLDI LEAFINLYGF TYMRLDGSTQ PEERQTLMQR FNTNPKYFLF ILSTRSDRCH RIGQTREVHI YRLISESTIE ENILKKANQK RALDDLVIQS
0901: GSYNMEFFKK LDPMELFSGH RNVEAAIKQA EDEADYMALK KLEQEEAVDN QEFTEDIIGR SEDDEPQMAA AAAAAGQASS SFENQLRPID RYAMRFLELW
1001: DPIVDKSAIE YQAIVEEQEW ELDRIEKFKD ELEAEIDEDQ EPFLYERWDA DFATTAYRQH VEALAQQQLL EELECEAQLA DDADDENDAF KNGTLDERKP
1101: KTKKKMKKTK FKSLKKGPLA SDMEVVHEEP SLDDISVDDK VLSPDIISAG SPTRSPPRKK RKKVFAPSED EENNLRKSIK KLKKASHTTE SDLRPASRTK
1201: SGGKISIAYV PVKRVIMVKP ERFRKRGPVW SKDCFPAPDI WSSQEDALLC AIVHEYGTNW SFISDTLNDI PCGGSYRGRF RHPVHCCERF RELFFKYVLS
1301: AMDSSNTEKI TSSGSGKALL KVTEDQIRVL LNVTSELPDN ELLLQKHFLA ILSSVWRANC LLESYRSRTS SKINFCSNRR FSDSCGKSQR LTGKMNLASS
1401: RQSSKLVSTA LTDVYKNHED SAIVSNELGS QSVVDHVNLM LDFPSDEVNY DSVFPSTISL SIHVPELPQA ANEPPGQFLL AESSCGIAEN RFRLASEACF
1501: EGDSCGWASS AFPSSDTNRY RCGLKSQSLG KHKSGSDIIK PSKLKIQRTT EVQEDPSLVS KYVAQPRPTT LMESFDILDT GCDHSQWHAM DALEEPQFVD
1601: IVPHAYDPNF FSGLEEMEPL QDITDVG
0101: KKFWIKIEKL VLYKFQLDVE ERKKKALDKQ LDFLLGQTER YSTMLAENLV DVHYSSRTED MGLKMEQDAH VECKSTDAPE GRAPLNNGSN CQEKLGAIFL
0201: NQIDPIKLDE SLNDGGDQGS QFRTASSPCT DEKSSTTSRP HRRRQGGGDI LSVVSSKGGQ RRIGIVEGER CRIFRQQMYL IGSLGVLTWF SSITFSEDDE
0301: CTIEEDEAQI TEEERREELT ALKAEADLPL EELLKFYAKD NCKLKIFDVC LINSDSFSDF AEYLNQVNGE NVKHHSAENN HVQQDFGQPH NRESNGDSFS
0401: FRGQLTIKKL QPKLCSENLD LCDMEHSTLG PSDDLDDRDY TAASEEKDDE TTLSEEEELA KKEEVNPLEE RYSLDCEIKS LKEESEMPVE ELVARYNKDL
0501: CIDDGMKKSD FSSSSTDDQP ENKTQNLKMI DGEYQEDKSP YQNELDSSVY KEIKTDCDNI MDGREMRTKF PFLLKHPLRE YQHIGLDWLV TMYEKRLNGI
0601: LADEMGLGKT IMTIALLAHL ACDKGIWGPH LIVVPTSVML NWETEFLKWC PAFKILTLVI QDSKSHQEFK DCSETQATLA SSNFFGMISV IMQLRKVCNH
0701: PDLFEGLDLC GLNFKPVYGT DLRKLVTIKH PVFDILEQKN NPSFECFMFA IPASRAPFPV CWCSKVYFPD RRLIQFDCGK LQELAILLRR LKAEGHRALI
0801: FTQMTKMLDI LEAFINLYGF TYMRLDGSTQ PEERQTLMQR FNTNPKYFLF ILSTRSDRCH RIGQTREVHI YRLISESTIE ENILKKANQK RALDDLVIQS
0901: GSYNMEFFKK LDPMELFSGH RNVEAAIKQA EDEADYMALK KLEQEEAVDN QEFTEDIIGR SEDDEPQMAA AAAAAGQASS SFENQLRPID RYAMRFLELW
1001: DPIVDKSAIE YQAIVEEQEW ELDRIEKFKD ELEAEIDEDQ EPFLYERWDA DFATTAYRQH VEALAQQQLL EELECEAQLA DDADDENDAF KNGTLDERKP
1101: KTKKKMKKTK FKSLKKGPLA SDMEVVHEEP SLDDISVDDK VLSPDIISAG SPTRSPPRKK RKKVFAPSED EENNLRKSIK KLKKASHTTE SDLRPASRTK
1201: SGGKISIAYV PVKRVIMVKP ERFRKRGPVW SKDCFPAPDI WSSQEDALLC AIVHEYGTNW SFISDTLNDI PCGGSYRGRF RHPVHCCERF RELFFKYVLS
1301: AMDSSNTEKI TSSGSGKALL KVTEDQIRVL LNVTSELPDN ELLLQKHFLA ILSSVWRANC LLESYRSRTS SKINFCSNRR FSDSCGKSQR LTGKMNLASS
1401: RQSSKLVSTA LTDVYKNHED SAIVSNELGS QSVVDHVNLM LDFPSDEVNY DSVFPSTISL SIHVPELPQA ANEPPGQFLL AESSCGIAEN RFRLASEACF
1501: EGDSCGWASS AFPSSDTNRY RCGLKSQSLG KHKSGSDIIK PSKLKIQRTT EVQEDPSLVS KYVAQPRPTT LMESFDILDT GCDHSQWHAM DALEEPQFVD
1601: IVPHAYDPNF FSGLEEMEPL QDITDVG
0001: MASKGGKSKP DIVMASKSGK SKPDNESRAK RQKTLEAPKE PRRPKTHWDH VLEEMAWLSK DFESERKWKL AQAKKVALRA SKGMLDQASR EERKLKEEEQ
0101: RLRKVALNIS KDMKKFWMKV EKLVLYKHQL VRNEKKKKAM DKQLEFLLGQ TERYSTMLAE NLVEPYKQGQ NTPSKPLLTI ESKSDEERAE QIPPEINSSA
0201: GLESGSPELD EDYDLKSEDE TEDDEDTIEE DEKHFTKRER QEELEALQNE VDLPVEELLR RYTSGRVSRE TSPVKDENED NLTSVSRVTS PVKDENQDNL
0301: ASVGQDHGED KNNLAASEET EGNPSVRRSN DSYGHLAISE THSHDLEPGM TTASVKSRKE DHTYDFNDEQ EDVDFVLANG EEKDDEATLA VEEELAKADN
0401: EDHVEEIALL QKESEMPIEV LLARYKEDFG GKDISEDESE SSFAVSEDSI VDSDENRQQA DLDDDNVDLT ECKLDPEPCS ENVEGTFHEV AEDNDKDSSD
0501: KIADAAAAAR SAQPTGFTYS TTKVRTKLPF LLKHSLREYQ HIGLDWLVTM YEKKLNGILA DEMGLGKTIM TIALLAHLAC DKGIWGPHLI VVPTSVMLNW
0601: ETEFLKWCPA FKILTYFGSA KERKLKRQGW MKLNSFHVCI TTYRLVIQDS KMFKRKKWKY LILDEAHLIK NWKSQRWQTL LNFNSKRRIL LTGTPLQNDL
0701: MELWSLMHFL MPHVFQSHQE FKDWFCNPIA GMVEGQEKIN KEVIDRLHNV LRPFLLRRLK RDVEKQLPSK HEHVIFCRLS KRQRNLYEDF IASTETQATL
0801: TSGSFFGMIS IIMQLRKVCN HPDLFEGRPI VSSFDMAGID VQLSSTICSL LLESPFSKVD LEALGFLFTH LDFSMTSWEG DEIKAISTPS ELIKQRVNLK
0901: DDLEAIPLSP KNRKNLQGTN IFEEIRKAVF EERIQESKDR AAAIAWWNSL RCQRKPTYST SLRTLLTIKG PLDDLKANCS SYMYSSILAD IVLSPIERFQ
1001: KMIELVEAFT FAIPAARVPS PTCWCSKSDS PVFLSPSYKE KVTDLLSPLL SPIRPAIVRR QVYFPDRRLI QFDCGKLQEL AMLLRKLKFG GHRALIFTQM
1101: TKMLDVLEAF INLYGYTYMR LDGSTPPEER QTLMQRFNTN PKIFLFILST RSGGVGINLV GADTVIFYDS DWNPAMDQQA QDRCHRIGQT REVHIYRLIS
1201: ESTIEENILK KANQKRVLDN LVIQNGEYNT EFFKKLDPME LFSGHKALTT KDEKETSKHC GADIPLSNAD VEAALKQAED EADYMALKRV EQEEAVDNQE
1301: FTEEPVERPE DDELVNEDDI KADEPADQGL VAAGPAKEEM SLLHSDIRDE RAVITTSSQE DDTDVLDDVK QMAAAAADAG QAISSFENQL RPIDRYAIRF
1401: LELWDPIIVE AAMENEAGFE EKEWELDHIE KYKEEMEAEI DDGEEPLVYE KWDADFATEA YRQQVEVLAQ HQLMEDLENE AREREAAEVA EMVLTQNESA
1501: HVLKPKKKKK AKKAKYKSLK KGSLAAESKH VKSVVKIEDS TDDDNEEFGY VSSSDSDMVT PLSRMHMKGK KRDLIVDTDE EKTSKKKAKK HKKSLPNSDI
1601: KYKQTSALLD ELEPSKPSDS MVVDNELKLT NRGKTVGKKF ITSMPIKRVL MIKPEKLKKG NLWSRDCVPS PDSWLPQEDA ILCAMVHEYG PNWNFVSGTL
1701: YGMTAGGAYR GRYRHPAYCC ERYRELIQRH ILSASDSAVN EKNLNTGSGK ALLKVTEENI RTLLNVAAEQ PDTEMLLQKH FSCLLSSIWR TSTRTGNDQM
1801: LSLNSPIFNR QFMGSVNHTQ DLARKPWQGM KVTSLSRKLL ESALQDSGPS QPDNTISRSR LQETQPINKL GLELTLEFPR GNDDSLNQFP PMISLSIDGS
1901: DSLNYVNEPP GEDVLKGSRV AAENRYRNAA NACIEDSFGW ASNTFPANDL KSRTGTKAQS LGKHKLSASD SAKSTKSKHR KLLAEQLEGA WVRPNDPNLK
2001: FDFTPGDREE EEEQEVDEKA NSAEIEMISC SQWYDPFFTS GLDDCSLASD ISEIE
0101: RLRKVALNIS KDMKKFWMKV EKLVLYKHQL VRNEKKKKAM DKQLEFLLGQ TERYSTMLAE NLVEPYKQGQ NTPSKPLLTI ESKSDEERAE QIPPEINSSA
0201: GLESGSPELD EDYDLKSEDE TEDDEDTIEE DEKHFTKRER QEELEALQNE VDLPVEELLR RYTSGRVSRE TSPVKDENED NLTSVSRVTS PVKDENQDNL
0301: ASVGQDHGED KNNLAASEET EGNPSVRRSN DSYGHLAISE THSHDLEPGM TTASVKSRKE DHTYDFNDEQ EDVDFVLANG EEKDDEATLA VEEELAKADN
0401: EDHVEEIALL QKESEMPIEV LLARYKEDFG GKDISEDESE SSFAVSEDSI VDSDENRQQA DLDDDNVDLT ECKLDPEPCS ENVEGTFHEV AEDNDKDSSD
0501: KIADAAAAAR SAQPTGFTYS TTKVRTKLPF LLKHSLREYQ HIGLDWLVTM YEKKLNGILA DEMGLGKTIM TIALLAHLAC DKGIWGPHLI VVPTSVMLNW
0601: ETEFLKWCPA FKILTYFGSA KERKLKRQGW MKLNSFHVCI TTYRLVIQDS KMFKRKKWKY LILDEAHLIK NWKSQRWQTL LNFNSKRRIL LTGTPLQNDL
0701: MELWSLMHFL MPHVFQSHQE FKDWFCNPIA GMVEGQEKIN KEVIDRLHNV LRPFLLRRLK RDVEKQLPSK HEHVIFCRLS KRQRNLYEDF IASTETQATL
0801: TSGSFFGMIS IIMQLRKVCN HPDLFEGRPI VSSFDMAGID VQLSSTICSL LLESPFSKVD LEALGFLFTH LDFSMTSWEG DEIKAISTPS ELIKQRVNLK
0901: DDLEAIPLSP KNRKNLQGTN IFEEIRKAVF EERIQESKDR AAAIAWWNSL RCQRKPTYST SLRTLLTIKG PLDDLKANCS SYMYSSILAD IVLSPIERFQ
1001: KMIELVEAFT FAIPAARVPS PTCWCSKSDS PVFLSPSYKE KVTDLLSPLL SPIRPAIVRR QVYFPDRRLI QFDCGKLQEL AMLLRKLKFG GHRALIFTQM
1101: TKMLDVLEAF INLYGYTYMR LDGSTPPEER QTLMQRFNTN PKIFLFILST RSGGVGINLV GADTVIFYDS DWNPAMDQQA QDRCHRIGQT REVHIYRLIS
1201: ESTIEENILK KANQKRVLDN LVIQNGEYNT EFFKKLDPME LFSGHKALTT KDEKETSKHC GADIPLSNAD VEAALKQAED EADYMALKRV EQEEAVDNQE
1301: FTEEPVERPE DDELVNEDDI KADEPADQGL VAAGPAKEEM SLLHSDIRDE RAVITTSSQE DDTDVLDDVK QMAAAAADAG QAISSFENQL RPIDRYAIRF
1401: LELWDPIIVE AAMENEAGFE EKEWELDHIE KYKEEMEAEI DDGEEPLVYE KWDADFATEA YRQQVEVLAQ HQLMEDLENE AREREAAEVA EMVLTQNESA
1501: HVLKPKKKKK AKKAKYKSLK KGSLAAESKH VKSVVKIEDS TDDDNEEFGY VSSSDSDMVT PLSRMHMKGK KRDLIVDTDE EKTSKKKAKK HKKSLPNSDI
1601: KYKQTSALLD ELEPSKPSDS MVVDNELKLT NRGKTVGKKF ITSMPIKRVL MIKPEKLKKG NLWSRDCVPS PDSWLPQEDA ILCAMVHEYG PNWNFVSGTL
1701: YGMTAGGAYR GRYRHPAYCC ERYRELIQRH ILSASDSAVN EKNLNTGSGK ALLKVTEENI RTLLNVAAEQ PDTEMLLQKH FSCLLSSIWR TSTRTGNDQM
1801: LSLNSPIFNR QFMGSVNHTQ DLARKPWQGM KVTSLSRKLL ESALQDSGPS QPDNTISRSR LQETQPINKL GLELTLEFPR GNDDSLNQFP PMISLSIDGS
1901: DSLNYVNEPP GEDVLKGSRV AAENRYRNAA NACIEDSFGW ASNTFPANDL KSRTGTKAQS LGKHKLSASD SAKSTKSKHR KLLAEQLEGA WVRPNDPNLK
2001: FDFTPGDREE EEEQEVDEKA NSAEIEMISC SQWYDPFFTS GLDDCSLASD ISEIE
Arabidopsis Description
PIE1Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 [Source:UniProtKB/Swiss-Prot;Acc:Q7X9V2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.