Factsheet for GSMUA_Achr3P23910_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P09960_001	Banana	nucleus	87.09	86.12
CDY47176	Canola	cytosol	37.89	85.44
KRH21031	Soybean	nucleus	83.54	83.69
VIT_05s0020g01780.t01	Wine grape	nucleus	84.47	83.61
KRH11241	Soybean	nucleus	83.72	83.49
KRH50913	Soybean	nucleus	81.95	82.8
KRH02212	Soybean	nucleus	81.57	82.34
PGSC0003DMT400079102	Potato	nucleus	81.38	82.23
PGSC0003DMT400058376	Potato	nucleus	81.48	81.86
AT3G06400.3	Thale cress	nucleus	80.92	81.84
Bra040221.1-P	Field mustard	nucleus	80.17	81.7
Solyc06g054560.2.1	Tomato	nucleus	81.01	81.62
CDY18857	Canola	nucleus	80.07	81.6
Solyc01g067390.2.1	Tomato	nucleus	80.92	81.22
CDY24695	Canola	nucleus	79.42	80.63
Bra020751.1-P	Field mustard	nucleus	79.33	80.53
KXG32501	Sorghum	nucleus	83.35	80.49
Os01t0367900-01	Rice	nucleus	82.69	79.86
AT5G18620.2	Thale cress	nucleus	80.07	79.85
Zm00001d040831_P021	Maize	nucleus	82.97	79.2
Zm00001d009312_P028	Maize	nucleus	83.16	78.67
CDY13907	Canola	nucleus	77.64	78.38
Bra002173.1-P	Field mustard	nucleus	77.64	78.01
TraesCS1D01G099600.1	Wheat	nucleus	80.73	77.96
TraesCS1B01G118900.2	Wheat	nucleus	80.64	77.94
CDX92595	Canola	nucleus	65.11	77.85
TraesCS1A01G091100.1	Wheat	nucleus	80.36	77.67
Os05t0150300-01	Rice	nucleus	82.6	76.25
CDY05261	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	79.7	75.2
CDY02609	Canola	nucleus	73.9	74.88
Bra023689.1-P	Field mustard	nucleus	76.52	74.3
HORVU1Hr1G021540.17	Barley	plasma membrane	80.54	72.9
TraesCS3D01G068900.1	Wheat	nucleus	76.15	72.61
TraesCS3B01G083400.1	Wheat	nucleus	76.52	72.13
TraesCS3A01G069900.2	Wheat	nucleus	76.24	72.12
HORVU3Hr1G012850.1	Barley	nucleus	75.4	71.14
GSMUA_Achr3P26090_001	Banana	cytosol	24.98	35.18
GSMUA_AchrUn_...	Banana	cytosol	15.62	34.43
GSMUA_Achr4P25930_001	Banana	cytosol	18.52	24.54
GSMUA_Achr8P29610_001	Banana	nucleus	31.99	20.36
GSMUA_Achr4P21270_001	Banana	cytosol	26.19	20.3
GSMUA_Achr6P20210_001	Banana	nucleus	27.78	20.26
GSMUA_Achr8P06840_001	Banana	nucleus	24.98	19.35
GSMUA_AchrUn_...	Banana	cytosol, nucleus	5.33	17.17
GSMUA_Achr6P02430_001	Banana	cytosol	14.31	16.94
GSMUA_Achr8P00120_001	Banana	nucleus	23.01	16.83
GSMUA_Achr1P24350_001	Banana	nucleus	25.63	12.85
GSMUA_AchrUn_...	Banana	nucleus, plastid	26.47	12.7
GSMUA_AchrUn_...	Banana	nucleus	24.79	12.35
GSMUA_Achr9P11210_001	Banana	nucleus	22.64	11.76
GSMUA_Achr6P29570_001	Banana	nucleus	22.26	11.11
GSMUA_Achr3P26510_001	Banana	nucleus	16.18	10.63

Protein Annotations

Gene3D:1.10.10.60	Gene3D:1.10.1040.30	Gene3D:1.20.5.1190	MapMan:12.4.1.1.4	Gene3D:3.40.50.10810	Gene3D:3.40.50.300
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003682
GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006325	GO:GO:0006338	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0016569	GO:GO:0016589	GO:GO:0016787	GO:GO:0016818
GO:GO:0016887	GO:GO:0031491	GO:GO:0043044	EnsemblPlantsGene:GSMUA_Achr3G23910_001	EnsemblPlants:GSMUA_Achr3P23910_001	EnsemblPlants:GSMUA_Achr3T23910_001
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:Homeobox-like_sf	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR017884
InterPro:IPR036306	InterPro:IPR038718	InterPro:ISWI	InterPro:ISWI_HAND-dom	InterPro:ISWI_HAND-dom_sf	UniProt:M0SHA7
InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFAM:PF09110	PFAM:PF09111	PFscan:PS51192
PFscan:PS51194	PFscan:PS51293	PANTHER:PTHR10799	PANTHER:PTHR10799:SF887	InterPro:SANT/Myb	InterPro:SANT_dom
InterPro:SLIDE	SMART:SM00487	SMART:SM00490	SMART:SM00717	InterPro:SNF2-like_sf	InterPro:SNF2_N
SUPFAM:SSF101224	SUPFAM:SSF46689	SUPFAM:SSF52540	UniParc:UPI0002958CFE	SEG:seg	:

Description

Probable chromatin-remodeling complex ATPase chain [Source:GMGC_GENE;Acc:GSMUA_Achr3G23910_001]

Coordinates

chr3:-:24591795..24602917

Molecular Weight (calculated)

123721.0 Da

IEP (calculated)

6.071

GRAVY (calculated)

-0.785

Length

1069 amino acids

Sequence
(BLAST)

0001: MAKPPKYEEF SDEGTSSGSI SSDEGPGSGA EGDQEVEEDD QEELEAVART GSSDDDEARE DDDQATEDDE AVGDEVKFWS DSCIFLTLGG LMKKQKIQEI
0101: LDAQNAAVDA DMNNKGKDRL KYLLQQTEIF AHFAKGSQSE SDNKPRGRGR HASKITEEEE DEEYLKEEED ALAGAGGTRL VSQPSCIQGK MRDYQLAGLN
0201: WMIRLYENGI NGILADEMGL GKTLQTISLL GYLHEYRGIT GPHMVVAPKS TLGNWMREIR RFCPVLRAVK FLGNPEERNH IRENLLVAGK FDVCVTSFEM
0301: AIKEKTALRR FSWRYVIIDE AHRIKNENSL LSKTMRLYHT NYRLLITGTP LQNNLHELWS LLNFLLPEIF SSAETFDKWF QISGENDQQE VIQQLHKVLR
0401: PFLLRRLKSD VEKGLPPKKE IILKVGMSQL QKHYYRALLQ KDLEVINAGG ERKRLLNIAM QLRKCCNHPY LFQGAEPGPP YTTGEHLITS AGKMVLLDKL
0501: LPKLKERGSR VLIFSQMTRL LDILEDYLMF RGYQYCRIDG NTGGEDRDAS IEAFNQPESE KFIFLLSTRA GGLGINLATA DVVILYDSDW NPQVDLQAQD
0601: RAHRIGQKKE VQVFRFCTEY TIEEKVIERA YKKLALDALV IQQGRLAEQK TVNKDELLQM VRFGAERVFN SNNSTITDED IYDIIAKGEK ATAELNAKMK
0701: KFTEDAIKFK MDDNAELYDF DDEKDDKELD LKKLVTENWI EPPKRERKRN YSESDYFKQA LRQGGAAKSK EPRIPRMPQL HDFQFFNTQR LSELYEKEVR
0801: YLMHTHQKNQ LKDTIPDGDE SEDLGDPLTA EEQEEKEQLL EEGFSTWTRK DFNTFIRACE KYGRNDIKSI ASEMEGKTEE EVGRYAKVFK ARYKELNDYD
0901: RIMKNIERGE GRISRRDEIM KAIGKKLDRY KNPWLELKIQ YGQNKGKLYN EECDRFMLCM IHKLGYGNWD DLKAAFRTSP LFRFDWFVKS RTTQELARRC
1001: DTLIRLVEKE NQEYDERERQ SRKDKKLTKN LTPSKRSMTK APALETPALS SFKRRRQSDD YTGSGRRRR

Best Arabidopsis Sequence Match ( AT3G06400.2 )
(BLAST)

0001: MARNSNSDEA FSSEEEEERV KDNEEEDEEE LEAVARSSGS DDDEVAAADE SPVSDGEAAP VEDDYEDEED EEKAEISKRE KARLKEMQKL KKQKIQEMLE
0101: SQNASIDADM NNKGKGRLKY LLQQTELFAH FAKSDGSSSQ KKAKGRGRHA SKITEEEEDE EYLKEEEDGL TGSGNTRLLT QPSCIQGKMR DYQLAGLNWL
0201: IRLYENGING ILADEMGLGK TLQTISLLAY LHEYRGINGP HMVVAPKSTL GNWMNEIRRF CPVLRAVKFL GNPEERRHIR EDLLVAGKFD ICVTSFEMAI
0301: KEKTALRRFS WRYIIIDEAH RIKNENSLLS KTMRLFSTNY RLLITGTPLQ NNLHELWALL NFLLPEIFSS AETFDEWFQI SGENDQQEVV QQLHKVLRPF
0401: LLRRLKSDVE KGLPPKKETI LKVGMSQMQK QYYKALLQKD LEAVNAGGER KRLLNIAMQL RKCCNHPYLF QGAEPGPPYT TGDHLITNAG KMVLLDKLLP
0501: KLKERDSRVL IFSQMTRLLD ILEDYLMYRG YLYCRIDGNT GGDERDASIE AYNKPGSEKF VFLLSTRAGG LGINLATADV VILYDSDWNP QVDLQAQDRA
0601: HRIGQKKEVQ VFRFCTESAI EEKVIERAYK KLALDALVIQ QGRLAEQKTV NKDELLQMVR YGAEMVFSSK DSTITDEDID RIIAKGEEAT AELDAKMKKF
0701: TEDAIQFKMD DSADFYDFDD DNKDENKLDF KKIVSDNWND PPKRERKRNY SESEYFKQTL RQGAPAKPKE PRIPRMPQLH DFQFFNIQRL TELYEKEVRY
0801: LMQTHQKNQL KDTIDVEEPE EGGDPLTTEE VEEKEGLLEE GFSTWSRRDF NTFLRACEKY GRNDIKSIAS EMEGKTEEEV ERYAKVFKER YKELNDYDRI
0901: IKNIERGEAR ISRKDEIMKA IGKKLDRYRN PWLELKIQYG QNKGKLYNEE CDRFMICMIH KLGYGNWDEL KAAFRTSSVF RFDWFVKSRT SQELARRCDT
1001: LIRLIEKENQ EFDERERQAR KEKKLAKSAT PSKRPLGRQA SESPSSTKKR KHLSMR

Arabidopsis Description

CHR11Chromatin-remodeling protein 11 [Source:UniProtKB/TrEMBL;Acc:F4JAV9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.