Factsheet for PGSC0003DMT400079102

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g054560.2.1	Tomato	nucleus	98.39	98.11
CDY47176	Canola	cytosol	39.89	89.03
PGSC0003DMT400058376	Potato	nucleus	89.41	88.91
KRH21031	Soybean	nucleus	88.28	87.54
KRH11241	Soybean	nucleus	88.28	87.13
VIT_05s0020g01780.t01	Wine grape	nucleus	88.75	86.94
KRH50913	Soybean	nucleus	86.67	86.67
KRH02212	Soybean	nucleus	86.2	86.12
AT3G06400.3	Thale cress	nucleus	84.69	84.77
Bra040221.1-P	Field mustard	nucleus	83.93	84.65
CDY18857	Canola	nucleus	83.84	84.56
AT5G18620.2	Thale cress	nucleus	84.78	83.68
CDY24695	Canola	nucleus	82.61	83.0
Bra020751.1-P	Field mustard	nucleus	82.51	82.91
GSMUA_Achr8P09960_001	Banana	nucleus	84.5	82.7
CDY13907	Canola	nucleus	82.23	82.15
CDX92595	Canola	nucleus	69.38	82.1
Bra002173.1-P	Field mustard	nucleus	82.23	81.77
GSMUA_Achr3P23910_001	Banana	nucleus	82.23	81.38
KXG32501	Sorghum	nucleus	83.55	79.86
Os01t0367900-01	Rice	nucleus	83.08	79.4
Zm00001d040831_P021	Maize	nucleus	83.18	78.57
CDY02609	Canola	nucleus	78.26	78.48
Zm00001d009312_P028	Maize	nucleus	83.74	78.41
TraesCS1B01G118900.2	Wheat	nucleus	81.57	78.03
TraesCS1D01G099600.1	Wheat	nucleus	81.47	77.87
CDY05261	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	82.99	77.49
TraesCS1A01G091100.1	Wheat	nucleus	81.0	77.49
Bra023689.1-P	Field mustard	nucleus	80.43	77.29
Os05t0150300-01	Rice	nucleus	81.57	74.53
TraesCS3D01G068900.1	Wheat	nucleus	77.79	73.42
HORVU1Hr1G021540.17	Barley	plasma membrane	81.47	72.99
TraesCS3B01G083400.1	Wheat	nucleus	78.07	72.84
TraesCS3A01G069900.2	Wheat	nucleus	77.5	72.57
HORVU3Hr1G012850.1	Barley	nucleus	76.47	71.4
PGSC0003DMT400040011	Potato	cytosol	25.9	36.34
PGSC0003DMT400038561	Potato	cytosol	25.33	35.26
PGSC0003DMT400066819	Potato	cytosol	12.1	34.5
PGSC0003DMT400011842	Potato	nucleus	10.3	15.77
PGSC0003DMT400000170	Potato	nucleus	0.66	4.79

Protein Annotations

Gene3D:1.10.10.60	Gene3D:1.10.1040.30	EntrezGene:102580212	MapMan:12.4.1.1.4	Gene3D:3.40.50.10810	Gene3D:3.40.50.300
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003682
GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006325	GO:GO:0006338	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0016569	GO:GO:0016589	GO:GO:0016787	GO:GO:0016818
GO:GO:0016887	GO:GO:0031491	GO:GO:0043044	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:Homeobox-like_sf
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR017884	InterPro:IPR036306	InterPro:IPR038718	InterPro:ISWI
InterPro:ISWI_HAND-dom	InterPro:ISWI_HAND-dom_sf	UniProt:M1D186	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271
PFAM:PF09110	PFAM:PF09111	EnsemblPlantsGene:PGSC0003DMG400030785	PGSC:PGSC0003DMG400030785	EnsemblPlants:PGSC0003DMT400079102	PFscan:PS51192
PFscan:PS51194	PFscan:PS51293	PANTHER:PTHR10799	PANTHER:PTHR10799:SF887	InterPro:SANT/Myb	InterPro:SANT_dom
InterPro:SLIDE	SMART:SM00487	SMART:SM00490	SMART:SM00717	InterPro:SNF2-like_sf	InterPro:SNF2_N
SUPFAM:SSF101224	SUPFAM:SSF46689	SUPFAM:SSF52540	UniParc:UPI000295B12F	RefSeq:XP_006356696.1	SEG:seg

Description

Helicase [Source:PGSC_GENE;Acc:PGSC0003DMG400030785]

Coordinates

chr6:+:40901305..40911152

Molecular Weight (calculated)

123143.0 Da

IEP (calculated)

5.767

GRAVY (calculated)

-0.822

Length

1058 amino acids

Sequence
(BLAST)

0001: MGKPSRDRSS SEESVSESSE EEQVQGQVND EEDEEELEAV ARAAEDSDEE EDDDAPTDGA DQEDEEEVAV NEISKREKAR LKEMQRMKKQ KIQDMLDSQN
0101: AAIEADMNVK GQGRLKYLLQ QTELFAHFAK GEQSTAPKKT KGRGRHASKV TEEEEDEEYL KDEDELSGNT RLVAQPSCIQ GKMRDYQLAG LNWLIRLYEN
0201: GINGILADEM GLGKTLQTIS LMGYLHEFRG ITGPHMVVAP KSTLGNWMNE IKRFCPVLRA VKFLGNPDER RYIREELLVA GKFDVCVTSF EMVIKEKSAL
0301: RRFNWRYIII DEAHRIKNEN SLLSKTMRLY NTNYRLLITG TPLQNNLHEL WALLNFLLPE IFSSAETFDE WFQISGETDQ QEVVQQLHKV LRPFLLRRLK
0401: SDVEKGLPPK KETILKVGMS QMQKQYYKAL LQKDLEVVNS GGERKRLLNI AMQLRKCCNH PYLFQGAEPG PPYTTGEHLV ENAGKMVLLD KLLPKLKERG
0501: SRVLIFSQMT RLLDILEDYL LFRGHQYCRI DGNTGGEDRD ASIEVFNKPG SEKFAFLLST RAGGLGINLA TADIVILYDS DWNPQVDLQA QDRAHRIGQK
0601: KEVQVFRFCT EYTIEEKVIE KAYKKLALDA LVIQQGRLAE QKTVNKDELL QMVRFGAEMV FSAKDSTITD EDIDRIIAKG EEATAELDAK MKKFTEDAIK
0701: FKMDDTAELY DFDDEKDENK VDFKKIVSDN WIEPPKRERK RNYSESEYFK QTMRQSGPAR PKEPRIPRMP QLHDFQFFNT QRLSELYEKE VRYLMTHQKN
0801: QVKDTIDMEE PEDAGEPLTA EEQEEKEQLL EEGFSMWSRR DFNTFIRACE KYGRNDLKSI AAEMEGKTEE EVERYAHVFK ERYKELNDYD RIIKNIERGE
0901: SRISRRDEIM KAIGKKLDRY KNPWLELKIQ YGQNKGKLYN EECDRFMICM VHKLGHGNWD ELKAAFRQST LFKFDWFVKS RTTQELARRC DALIRLIERE
1001: NQEYDERERQ ARKEKKLAKN TTPSKRTLAR QAAESPSALK KRKQLSMDDY VSSGKRRK

Best Arabidopsis Sequence Match ( AT3G06400.2 )
(BLAST)

0001: MARNSNSDEA FSSEEEEERV KDNEEEDEEE LEAVARSSGS DDDEVAAADE SPVSDGEAAP VEDDYEDEED EEKAEISKRE KARLKEMQKL KKQKIQEMLE
0101: SQNASIDADM NNKGKGRLKY LLQQTELFAH FAKSDGSSSQ KKAKGRGRHA SKITEEEEDE EYLKEEEDGL TGSGNTRLLT QPSCIQGKMR DYQLAGLNWL
0201: IRLYENGING ILADEMGLGK TLQTISLLAY LHEYRGINGP HMVVAPKSTL GNWMNEIRRF CPVLRAVKFL GNPEERRHIR EDLLVAGKFD ICVTSFEMAI
0301: KEKTALRRFS WRYIIIDEAH RIKNENSLLS KTMRLFSTNY RLLITGTPLQ NNLHELWALL NFLLPEIFSS AETFDEWFQI SGENDQQEVV QQLHKVLRPF
0401: LLRRLKSDVE KGLPPKKETI LKVGMSQMQK QYYKALLQKD LEAVNAGGER KRLLNIAMQL RKCCNHPYLF QGAEPGPPYT TGDHLITNAG KMVLLDKLLP
0501: KLKERDSRVL IFSQMTRLLD ILEDYLMYRG YLYCRIDGNT GGDERDASIE AYNKPGSEKF VFLLSTRAGG LGINLATADV VILYDSDWNP QVDLQAQDRA
0601: HRIGQKKEVQ VFRFCTESAI EEKVIERAYK KLALDALVIQ QGRLAEQKTV NKDELLQMVR YGAEMVFSSK DSTITDEDID RIIAKGEEAT AELDAKMKKF
0701: TEDAIQFKMD DSADFYDFDD DNKDENKLDF KKIVSDNWND PPKRERKRNY SESEYFKQTL RQGAPAKPKE PRIPRMPQLH DFQFFNIQRL TELYEKEVRY
0801: LMQTHQKNQL KDTIDVEEPE EGGDPLTTEE VEEKEGLLEE GFSTWSRRDF NTFLRACEKY GRNDIKSIAS EMEGKTEEEV ERYAKVFKER YKELNDYDRI
0901: IKNIERGEAR ISRKDEIMKA IGKKLDRYRN PWLELKIQYG QNKGKLYNEE CDRFMICMIH KLGYGNWDEL KAAFRTSSVF RFDWFVKSRT SQELARRCDT
1001: LIRLIEKENQ EFDERERQAR KEKKLAKSAT PSKRPLGRQA SESPSSTKKR KHLSMR

Arabidopsis Description

CHR11Chromatin-remodeling protein 11 [Source:UniProtKB/TrEMBL;Acc:F4JAV9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.