CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plasma membrane, golgi, nucleus

Predictor Summary:

nucleus 3
plastid 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, secretory
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24695	Canola	nucleus	92.5	99.53
Bra020751.1-P	Field mustard	nucleus	92.23	99.24
CDY18857	Canola	nucleus	87.91	94.95
AT3G06400.3	Thale cress	nucleus	87.38	93.66
CDY47176	Canola	cytosol	38.92	93.04
CDY13907	Canola	nucleus	81.02	86.69
CDX92595	Canola	nucleus	68.23	86.47
KRH21031	Soybean	nucleus	80.41	85.38
KRH11241	Soybean	nucleus	80.67	85.26
KRH50913	Soybean	nucleus	79.52	85.16
KRH02212	Soybean	nucleus	78.99	84.51
VIT_05s0020g01780.t01	Wine grape	nucleus	79.96	83.89
PGSC0003DMT400058376	Potato	nucleus	78.29	83.36
Solyc01g067390.2.1	Tomato	nucleus	78.29	83.29
PGSC0003DMT400079102	Potato	nucleus	77.49	82.99
Solyc06g054560.2.1	Tomato	nucleus	77.58	82.85
GSMUA_Achr8P09960_001	Banana	nucleus	77.58	81.31
CDY02609	Canola	nucleus	75.38	80.95
GSMUA_Achr3P23910_001	Banana	nucleus	75.2	79.7
KXG32501	Sorghum	nucleus	76.35	78.14
Os01t0367900-01	Rice	nucleus	76.17	77.96
TraesCS1D01G099600.1	Wheat	nucleus	75.55	77.33
TraesCS1B01G118900.2	Wheat	nucleus	75.46	77.31
TraesCS1A01G091100.1	Wheat	nucleus	75.2	77.03
Zm00001d040831_P021	Maize	nucleus	76.08	76.96
Zm00001d009312_P028	Maize	nucleus	76.52	76.73
Os05t0150300-01	Rice	nucleus	75.9	74.27
HORVU1Hr1G021540.17	Barley	plasma membrane	76.08	72.99
TraesCS3D01G068900.1	Wheat	nucleus	72.2	72.97
TraesCS3B01G083400.1	Wheat	nucleus	72.73	72.66
TraesCS3A01G069900.2	Wheat	nucleus	72.2	72.39
HORVU3Hr1G012850.1	Barley	nucleus	71.32	71.32
CDY30755	Canola	cytosol	24.27	35.53
CDY53848	Canola	cytosol	24.1	35.41
CDY57125	Canola	cytosol	23.48	34.73
CDX81370	Canola	cytosol	23.48	34.73
CDY18840	Canola	nucleus	25.77	26.96
CDY18960	Canola	cytosol	20.56	26.81
CDX74702	Canola	cytosol	20.39	26.55
CDY04120	Canola	cytosol	17.65	26.32
CDY48619	Canola	nucleus, plastid	17.65	26.14
CDX75208	Canola	cytosol	23.83	22.58
CDX68802	Canola	cytosol	24.01	22.41
CDY56279	Canola	cytosol	25.07	21.15
CDX76767	Canola	cytosol, nucleus, plastid	25.42	20.93
CDX81444	Canola	nucleus	30.27	20.26
CDY37209	Canola	nucleus	30.1	20.23
CDY67658	Canola	cytosol, nucleus	19.15	19.22
CDY68094	Canola	nucleus	19.42	17.64
CDY30994	Canola	nucleus	9.27	16.41
CDX72050	Canola	cytosol	21.01	16.16
CDX95673	Canola	cytosol	13.59	15.65
CDX88940	Canola	nucleus	21.98	15.05
CDY08401	Canola	nucleus	25.33	14.31
CDY52874	Canola	nucleus	25.42	14.28
CDY37083	Canola	plastid	24.27	13.04
CDY27338	Canola	nucleus, plastid	24.18	13.02
CDX83383	Canola	nucleus, plastid	24.54	13.02
CDY06115	Canola	nucleus	20.92	12.59
CDY14410	Canola	nucleus	25.15	11.39
CDY07678	Canola	nucleus	25.07	10.33
CDX95672	Canola	plastid	6.97	7.31
CDY71637	Canola	nucleus	2.12	3.24

Protein Annotations

Gene3D:1.10.10.60	Gene3D:1.10.1040.30	Gene3D:1.20.5.1190	MapMan:12.4.1.1.4	Gene3D:3.40.50.10810	Gene3D:3.40.50.300
GO:A0A078EVH1	EnsemblPlants:CDY05261	ProteinID:CDY05261	ProteinID:CDY05261.1	ncoils:Coil	InterPro:DBINO
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0003824
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006325	GO:GO:0006338	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0016569	GO:GO:0016589	GO:GO:0016787	GO:GO:0016818	GO:GO:0016887
GO:GO:0031491	GO:GO:0043044	EnsemblPlantsGene:GSBRNA2T00120084001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:Homeobox-like_sf
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR017884	InterPro:IPR020838	InterPro:IPR036306	InterPro:IPR038718
InterPro:ISWI	InterPro:ISWI_HAND-dom	InterPro:ISWI_HAND-dom_sf	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271
PFAM:PF09110	PFAM:PF09111	PFAM:PF13892	PFscan:PS51192	PFscan:PS51194	PFscan:PS51293
PANTHER:PTHR10799	PANTHER:PTHR10799:SF887	InterPro:SANT/Myb	InterPro:SANT_dom	InterPro:SLIDE	SMART:SM00487
SMART:SM00490	SMART:SM00717	InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF101224	SUPFAM:SSF46689
SUPFAM:SSF52540	UniParc:UPI0004EF0250	SEG:seg	:	:	:

Description

BnaC05g45420D

Coordinates

chrLK031960:+:673739..681317

Molecular Weight (calculated)

131395.0 Da

IEP (calculated)

5.856

GRAVY (calculated)

-0.760

Length

1133 amino acids

Sequence
(BLAST)

0001: MIYISYNGFL MIYTTVYSWF QPFSFLLEAL GNDHLISIPG AGTFQNPIHH VARNSDSTKR RWHIVAVGSN GYKFHRFPMA KFSNRDDAYS SEEDEEHVEN
0101: NAGGEEEDEE ELEAVARSSD SDEEAVPEES PVSDDEIAPI EDDYEDEEDD EKVEISKREK ARLREMQKVK KQKLQEMLES QNASIDADMN NKGKGRLKFL
0201: LQQTELFAHF AKGDASSSSS QKKVKGRGRH ASKVTEEEED EEYLKEEEGG LAASGNTRLL TQPSCIQGKM RDYQLAGLNW LIRLYENGIN GILADEMGLG
0301: KTLQTISLLA YLHEYRGISG PHMVVAPKST LGNWMNEIRR FCPVLRAVKF LGNPEERRHI REDLLVAGKF DVCVTSFEMA IKEKTALRRF SWRYIIIDEA
0401: HRIKNENSLL SKTMRLFSTN YRLLITGTPL QNNLHELWAL LNFLLPEVFS SAETFDEWFQ ISGENDQQEV VQQLHKVLRP FLLRRLKSDV EKGLPPKKET
0501: ILKVGMSQMQ KQYYKALLQK DLEALNAGGE RKRLLNIAMQ LRKCCNHPYL FQGAEPGPPY TTGDHLITNA GKMVLLDKLL PKLKERDSRV LIFSQMTRLL
0601: DILEDYLMYR GYLYCRIDGN TGGDDRDASI EAYNKPGSEK FVFLLSTRAG GLGINLATAD VVILYDSDWN PQVDLQAQDR AHRIGQKKEV QVFRFCTESA
0701: IEEKVIERAY KKLALDALVI QQGRLAEQKT VNKDELLQMV RYGAEMVFSS KDSTITDEDI DRIIAKGEEA TAELDAKMKK FTEDAIQFKM DDSADFYDFD
0801: DENKDENKLD FKKIVSDNWN DPPKRERKRN YSEAEYYKQT LRQGAPSKPK EPRIPRMPQL HDFQFFNIQR LTELYEKEVR YLMQTHQKNQ LKDTVEEEEP
0901: EGGDPLTAEE VEEKEALLEE GFSTWNKRDF NSFLRACEKY GRNDITSIAS EMEGKTEEEV ERYAQVFKER YKELNDYDRI IKNIERGEAR ISRKDEIMKA
1001: LGKKLDRYRN PWLEMKIQYG QNKGKLYNEE CDRFMICMIH KLGYGNWDEL KAAYRTSPLF RFDWFVKSRT SQELARRCDT LIRLIEKENQ ELDERERQAR
1101: KEKKLAKSAT PSKRPLGGPS ESPSSLKKRK HLR

Best Arabidopsis Sequence Match ( AT3G06400.1 )
(BLAST)

0001: MARNSNSDEA FSSEEEEERV KDNEEEDEEE LEAVARSSGS DDDEVAAADE SPVSDGEAAP VEDDYEDEED EEKAEISKRE KARLKEMQKL KKQKIQEMLE
0101: SQNASIDADM NNKGKGRLKY LLQQTELFAH FAKSDGSSSQ KKAKGRGRHA SKITEEEEDE EYLKEEEDGL TGSGNTRLLT QPSCIQGKMR DYQLAGLNWL
0201: IRLYENGING ILADEMGLGK TLQTISLLAY LHEYRGINGP HMVVAPKSTL GNWMNEIRRF CPVLRAVKFL GNPEERRHIR EDLLVAGKFD ICVTSFEMAI
0301: KEKTALRRFS WRYIIIDEAH RIKNENSLLS KTMRLFSTNY RLLITGTPLQ NNLHELWALL NFLLPEIFSS AETFDEWFQI SGENDQQEVV QQLHKVLRPF
0401: LLRRLKSDVE KGLPPKKETI LKVGMSQMQK QYYKALLQKD LEAVNAGGER KRLLNIAMQL RKCCNHPYLF QGAEPGPPYT TGDHLITNAG KMVLLDKLLP
0501: KLKERDSRVL IFSQMTRLLD ILEDYLMYRG YLYCRIDGNT GGDERDASIE AYNKPGSEKF VFLLSTRAGG LGINLATADV VILYDSDWNP QVDLQAQDRA
0601: HRIGQKKEVQ VFRFCTESAI EEKVIERAYK KLALDALVIQ QGRLAEQKTV NKDELLQMVR YGAEMVFSSK DSTITDEDID RIIAKGEEAT AELDAKMKKF
0701: TEDAIQFKMD DSADFYDFDD DNKDENKLDF KKIVSDNWND PPKRERKRNY SESEYFKQTL RQGAPAKPKE PRIPRMPQLH DFQFFNIQRL TELYEKEVRY
0801: LMQTHQKNQL KDTIDVEEPE GGDPLTTEEV EEKEGLLEEG FSTWSRRDFN TFLRACEKYG RNDIKSIASE MEGKTEEEVE RYAKVFKERY KELNDYDRII
0901: KNIERGEARI SRKDEIMKAI GKKLDRYRNP WLELKIQYGQ NKGKLYNEEC DRFMICMIHK LGYGNWDELK AAFRTSSVFR FDWFVKSRTS QELARRCDTL
1001: IRLIEKENQE FDERERQARK EKKLAKSATP SKRPLGRQAS ESPSSTKKRK HLSMR

Arabidopsis Description

CHR11Chromatin-remodeling protein 11 [Source:UniProtKB/TrEMBL;Acc:F4JAV9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.