Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY53848 | Canola | cytosol | 98.58 | 98.96 |
| CDY57125 | Canola | cytosol | 87.98 | 88.9 |
| CDX81370 | Canola | cytosol | 87.98 | 88.9 |
| AT5G66750.1 | Thale cress | cytosol | 86.3 | 87.43 |
| VIT_04s0023g01610.t01 | Wine grape | cytosol | 72.48 | 73.91 |
| PGSC0003DMT400040011 | Potato | cytosol | 71.06 | 72.94 |
| PGSC0003DMT400038561 | Potato | cytosol | 69.38 | 70.66 |
| KRH76800 | Soybean | cytosol | 69.51 | 70.6 |
| KRH28662 | Soybean | cytosol | 69.25 | 70.25 |
| Solyc02g062780.2.1 | Tomato | cytosol | 69.38 | 69.65 |
| GSMUA_Achr3P26090_001 | Banana | cytosol | 65.63 | 66.93 |
| Solyc02g085390.2.1 | Tomato | cytosol | 69.64 | 66.46 |
| TraesCS7A01G074600.1 | Wheat | cytosol | 61.5 | 63.38 |
| TraesCS7D01G069700.1 | Wheat | cytosol | 62.79 | 62.39 |
| EER97913 | Sorghum | cytosol | 62.4 | 62.08 |
| Zm00001d007978_P003 | Maize | cytosol | 62.53 | 61.42 |
| TraesCS2A01G368200.1 | Wheat | cytosol | 61.11 | 60.72 |
| TraesCS4D01G053600.2 | Wheat | cytosol | 64.47 | 59.76 |
| TraesCS4A01G261000.1 | Wheat | cytosol | 64.21 | 59.31 |
| EER93549 | Sorghum | cytosol | 62.79 | 58.13 |
| Os09t0442700-01 | Rice | cytosol | 63.44 | 58.11 |
| TraesCS2D01G365000.1 | Wheat | cytosol | 61.63 | 58.1 |
| TraesCS2B01G385300.1 | Wheat | cytosol | 61.37 | 58.0 |
| Os03t0722400-01 | Rice | cytosol | 63.44 | 57.83 |
| Zm00001d033827_P006 | Maize | cytosol | 62.27 | 56.84 |
| TraesCS4A01G372200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 63.31 | 56.19 |
| TraesCS4B01G053600.1 | Wheat | cytosol, plastid | 64.34 | 54.97 |
| CDY47176 | Canola | cytosol | 28.29 | 46.2 |
| CDX92595 | Canola | nucleus | 34.5 | 29.87 |
| CDY18857 | Canola | nucleus | 35.79 | 26.41 |
| CDY48619 | Canola | nucleus, plastid | 25.97 | 26.27 |
| CDY04120 | Canola | cytosol | 25.71 | 26.18 |
| CDY24695 | Canola | nucleus | 35.14 | 25.83 |
| CDY13907 | Canola | nucleus | 34.63 | 25.31 |
| CDY02609 | Canola | nucleus | 34.24 | 25.12 |
| CDY05261 | Canola | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 35.53 | 24.27 |
| CDY18840 | Canola | nucleus | 33.2 | 23.73 |
| CDY18960 | Canola | cytosol | 26.36 | 23.48 |
| CDX74702 | Canola | cytosol | 26.1 | 23.22 |
| CDX75208 | Canola | cytosol | 27.52 | 17.81 |
| CDX68802 | Canola | cytosol | 27.78 | 17.71 |
| CDY30994 | Canola | nucleus | 13.7 | 16.56 |
| CDY56279 | Canola | cytosol | 28.42 | 16.38 |
| CDX76767 | Canola | cytosol, nucleus, plastid | 28.17 | 15.84 |
| CDY67658 | Canola | cytosol, nucleus | 21.19 | 14.53 |
| CDY37209 | Canola | nucleus | 31.52 | 14.47 |
| CDX81444 | Canola | nucleus | 31.65 | 14.47 |
| CDX72050 | Canola | cytosol | 27.26 | 14.32 |
| CDX88940 | Canola | nucleus | 29.59 | 13.85 |
| CDY68094 | Canola | nucleus | 21.19 | 13.15 |
| CDY08401 | Canola | nucleus | 31.78 | 12.27 |
| CDY52874 | Canola | nucleus | 31.78 | 12.2 |
| CDY06115 | Canola | nucleus | 27.13 | 11.15 |
| CDX95673 | Canola | cytosol | 13.82 | 10.87 |
| CDY37083 | Canola | plastid | 29.59 | 10.86 |
| CDY27338 | Canola | nucleus, plastid | 29.46 | 10.84 |
| CDX83383 | Canola | nucleus, plastid | 28.68 | 10.4 |
| CDY14410 | Canola | nucleus | 32.43 | 10.03 |
| CDY07678 | Canola | nucleus | 32.3 | 9.1 |
| CDX95672 | Canola | plastid | 8.53 | 6.11 |
| CDY71637 | Canola | nucleus | 2.71 | 2.84 |
Protein Annotations
| MapMan:12.5.2.1 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | GO:A0A078GWB1 | UniProt:A0A078GWB1 | EnsemblPlants:CDY30755 |
| ProteinID:CDY30755 | ProteinID:CDY30755.1 | ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005524 | EnsemblPlantsGene:GSBRNA2T00046168001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:IPR038718 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 |
| PANTHER:PTHR10799 | PANTHER:PTHR10799:SF812 | SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N |
| SUPFAM:SSF52540 | UniParc:UPI0004EF09ED | SEG:seg | : | : | : |
Description
BnaC07g16550DBnaC07g16550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GWB1]
Coordinates
chrLK032260:-:7977..11925
Molecular Weight (calculated)
87650.8 Da
IEP (calculated)
6.126
GRAVY (calculated)
-0.571
Length
774 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSLRSTENT PASEMASDGK TEKDGSGDSP TSVLSDEENC EEKTATVAVE EEILLAKNGD SSLISEAMAQ EEEQLLKIRE DEEIAKRAAG SGEAPDLNDT
101: QFTKLDELLT QTQLYSEFLL EKMEDITKNG IEGETQKAEP EPEPEPEKKG RGRKRKAAPQ GDSMKAKKAV AAMISRSKEG RESADSDLTE EERVMKEQGE
201: LVPLLTGGKL KSYQLKGVKW LISLWQNGLN GILADQMGLG KTIQTIGFLS HLKGNGLDGP YLVIAPLSTL SNWMNEIARF TPSINAIIYH GDKKERDELR
301: KRHMPRTVGP KFPIVITSYE VAMNDAKKNL RHYPWKYVVI DEGHRLKNHK CKLLRELRYL NMENKLLLTG TPLQNNLSEL WSLLNFILPD IFASHDEFES
401: WFDFSGKNNN EATKEEGEEK RRAQVVAKLH NILRPFILRR MKCDVELSLP RKKEIIIYAT MTDHQKKFQE HLVNHTLEAH IRDDTVRGHG LKGKLNNLAI
501: QLRKNCNHPD LLVGQLDGSY LYPPLEDIVG QCGKFRLLER LLVRLFAKNH RVLIFSQWTK ILDIMDYYFS EKGFEVCRID GSVKLEERRR QIQEFNDEKS
601: NCRIFLLSTR AGGLGINLTA ADTCILYDSD WNPQMDLQAM DRCHRIGQTK PVHVYRLATA QSIEGRVLKR AYSKLKLEHV VIGKGQFHQE RAKSSTPLEE
701: DDILALLKDD ENAEDKLIQT DISEEDLDRV LDRSDLMITL PGETQAHEAF PVKGPGWEVV SSSSAGGMLS SLNS
101: QFTKLDELLT QTQLYSEFLL EKMEDITKNG IEGETQKAEP EPEPEPEKKG RGRKRKAAPQ GDSMKAKKAV AAMISRSKEG RESADSDLTE EERVMKEQGE
201: LVPLLTGGKL KSYQLKGVKW LISLWQNGLN GILADQMGLG KTIQTIGFLS HLKGNGLDGP YLVIAPLSTL SNWMNEIARF TPSINAIIYH GDKKERDELR
301: KRHMPRTVGP KFPIVITSYE VAMNDAKKNL RHYPWKYVVI DEGHRLKNHK CKLLRELRYL NMENKLLLTG TPLQNNLSEL WSLLNFILPD IFASHDEFES
401: WFDFSGKNNN EATKEEGEEK RRAQVVAKLH NILRPFILRR MKCDVELSLP RKKEIIIYAT MTDHQKKFQE HLVNHTLEAH IRDDTVRGHG LKGKLNNLAI
501: QLRKNCNHPD LLVGQLDGSY LYPPLEDIVG QCGKFRLLER LLVRLFAKNH RVLIFSQWTK ILDIMDYYFS EKGFEVCRID GSVKLEERRR QIQEFNDEKS
601: NCRIFLLSTR AGGLGINLTA ADTCILYDSD WNPQMDLQAM DRCHRIGQTK PVHVYRLATA QSIEGRVLKR AYSKLKLEHV VIGKGQFHQE RAKSSTPLEE
701: DDILALLKDD ENAEDKLIQT DISEEDLDRV LDRSDLMITL PGETQAHEAF PVKGPGWEVV SSSSAGGMLS SLNS
001: MVSLRSRKVI PASEMVSDGK TEKDASGDSP TSVLNEEENC EEKSVTVVEE EILLAKNGDS SLISEAMAQE EEQLLKLRED EEKANNAGSA VAPNLNETQF
101: TKLDELLTQT QLYSEFLLEK MEDITINGIE SESQKAEPEK TGRGRKRKAA SQYNNTKAKR AVAAMISRSK EDGETINSDL TEEETVIKLQ NELCPLLTGG
201: QLKSYQLKGV KWLISLWQNG LNGILADQMG LGKTIQTIGF LSHLKGNGLD GPYLVIAPLS TLSNWFNEIA RFTPSINAII YHGDKNQRDE LRRKHMPKTV
301: GPKFPIVITS YEVAMNDAKR ILRHYPWKYV VIDEGHRLKN HKCKLLRELK HLKMDNKLLL TGTPLQNNLS ELWSLLNFIL PDIFTSHDEF ESWFDFSEKN
401: KNEATKEEEE KRRAQVVSKL HGILRPFILR RMKCDVELSL PRKKEIIMYA TMTDHQKKFQ EHLVNNTLEA HLGENAIRGQ GWKGKLNNLV IQLRKNCNHP
501: DLLQGQIDGS YLYPPVEEIV GQCGKFRLLE RLLVRLFANN HKVLIFSQWT KLLDIMDYYF SEKGFEVCRI DGSVKLDERR RQIKDFSDEK SSCSIFLLST
601: RAGGLGINLT AADTCILYDS DWNPQMDLQA MDRCHRIGQT KPVHVYRLST AQSIETRVLK RAYSKLKLEH VVIGQGQFHQ ERAKSSTPLE EEDILALLKE
701: DETAEDKLIQ TDISDADLDR LLDRSDLTIT APGETQAAEA FPVKGPGWEV VLPSSGGMLS SLNS
101: TKLDELLTQT QLYSEFLLEK MEDITINGIE SESQKAEPEK TGRGRKRKAA SQYNNTKAKR AVAAMISRSK EDGETINSDL TEEETVIKLQ NELCPLLTGG
201: QLKSYQLKGV KWLISLWQNG LNGILADQMG LGKTIQTIGF LSHLKGNGLD GPYLVIAPLS TLSNWFNEIA RFTPSINAII YHGDKNQRDE LRRKHMPKTV
301: GPKFPIVITS YEVAMNDAKR ILRHYPWKYV VIDEGHRLKN HKCKLLRELK HLKMDNKLLL TGTPLQNNLS ELWSLLNFIL PDIFTSHDEF ESWFDFSEKN
401: KNEATKEEEE KRRAQVVSKL HGILRPFILR RMKCDVELSL PRKKEIIMYA TMTDHQKKFQ EHLVNNTLEA HLGENAIRGQ GWKGKLNNLV IQLRKNCNHP
501: DLLQGQIDGS YLYPPVEEIV GQCGKFRLLE RLLVRLFANN HKVLIFSQWT KLLDIMDYYF SEKGFEVCRI DGSVKLDERR RQIKDFSDEK SSCSIFLLST
601: RAGGLGINLT AADTCILYDS DWNPQMDLQA MDRCHRIGQT KPVHVYRLST AQSIETRVLK RAYSKLKLEH VVIGQGQFHQ ERAKSSTPLE EEDILALLKE
701: DETAEDKLIQ TDISDADLDR LLDRSDLTIT APGETQAAEA FPVKGPGWEV VLPSSGGMLS SLNS
Arabidopsis Description
DDM1ATP-dependent DNA helicase DDM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XFH4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.