CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57125	Canola	cytosol	96.48	96.48
AT5G66750.1	Thale cress	cytosol	87.86	88.09
CDY53848	Canola	cytosol	88.64	88.07
CDY30755	Canola	cytosol	88.9	87.98
VIT_04s0023g01610.t01	Wine grape	cytosol	72.19	72.86
PGSC0003DMT400040011	Potato	cytosol	71.41	72.55
PGSC0003DMT400038561	Potato	cytosol	69.45	70.0
Solyc02g062780.2.1	Tomato	cytosol	70.37	69.91
KRH76800	Soybean	cytosol	69.06	69.42
KRH28662	Soybean	cytosol	68.41	68.68
GSMUA_Achr3P26090_001	Banana	cytosol	66.58	67.19
Solyc02g085390.2.1	Tomato	cytosol	70.1	66.21
TraesCS7A01G074600.1	Wheat	cytosol	62.14	63.38
TraesCS7D01G069700.1	Wheat	cytosol	63.32	62.26
EER97913	Sorghum	cytosol	62.92	61.95
Zm00001d007978_P003	Maize	cytosol	63.19	61.42
TraesCS2A01G368200.1	Wheat	cytosol	60.84	59.82
TraesCS4D01G053600.2	Wheat	cytosol	64.23	58.92
TraesCS4A01G261000.1	Wheat	cytosol	64.1	58.59
EER93549	Sorghum	cytosol	63.45	58.13
Os09t0442700-01	Rice	cytosol	63.97	57.99
Os03t0722400-01	Rice	cytosol	64.1	57.83
TraesCS2D01G365000.1	Wheat	cytosol	61.49	57.37
TraesCS2B01G385300.1	Wheat	cytosol	61.23	57.27
Zm00001d033827_P006	Maize	cytosol	62.66	56.6
TraesCS4A01G372200.1	Wheat	cytosol, endoplasmic reticulum, nucleus	63.84	56.08
TraesCS4B01G053600.1	Wheat	cytosol, plastid	63.97	54.08
CDY47176	Canola	cytosol	28.07	45.36
CDX92595	Canola	nucleus	33.81	28.97
CDY48619	Canola	nucleus, plastid	26.11	26.14
CDY04120	Canola	cytosol	25.85	26.05
CDY18857	Canola	nucleus	35.12	25.64
CDY24695	Canola	nucleus	34.33	24.98
CDY13907	Canola	nucleus	33.94	24.55
CDY02609	Canola	nucleus	33.42	24.27
CDY18840	Canola	nucleus	33.55	23.73
CDY05261	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	34.73	23.48
CDY18960	Canola	cytosol	26.5	23.36
CDX74702	Canola	cytosol	26.24	23.1
CDX75208	Canola	cytosol	27.68	17.73
CDX68802	Canola	cytosol	27.94	17.63
CDY56279	Canola	cytosol	29.37	16.75
CDX76767	Canola	cytosol, nucleus, plastid	29.11	16.21
CDY30994	Canola	nucleus	13.32	15.94
CDY67658	Canola	cytosol, nucleus	21.28	14.44
CDX81444	Canola	nucleus	31.33	14.18
CDY37209	Canola	nucleus	31.2	14.18
CDX72050	Canola	cytosol	27.15	14.12
CDX88940	Canola	nucleus	29.37	13.6
CDY68094	Canola	nucleus	21.28	13.07
CDY08401	Canola	nucleus	31.07	11.87
CDY52874	Canola	nucleus	31.07	11.8
CDY06115	Canola	nucleus	27.02	10.99
CDY37083	Canola	plastid	29.37	10.67
CDY27338	Canola	nucleus, plastid	29.24	10.65
CDX95673	Canola	cytosol	13.58	10.57
CDX83383	Canola	nucleus, plastid	28.46	10.21
CDY14410	Canola	nucleus	32.77	10.03
CDY07678	Canola	nucleus	32.64	9.1
CDX95672	Canola	plastid	8.49	6.02
CDY71637	Canola	nucleus	2.61	2.7

Protein Annotations

MapMan:12.5.2.1	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	GO:A0A078CWY8	EnsemblPlants:CDX81370	ProteinID:CDX81370
ProteinID:CDX81370.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
EnsemblPlantsGene:GSBRNA2T00134931001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR038718
InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799
PANTHER:PTHR10799:SF812	SMART:SM00487	SMART:SM00490	InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF52540
UniParc:UPI0004EF4D96	SEG:seg	:	:	:	:

Description

BnaC09g07810D

Coordinates

chrLK031824:-:1284736..1288800

Molecular Weight (calculated)

86728.0 Da

IEP (calculated)

6.651

GRAVY (calculated)

-0.521

Length

766 amino acids

Sequence
(BLAST)

001: MVSLRSSKTT PVPVISSDGK TEKNASADSS SSVLSEEENS EETLVEKEIL LAKNGDSSLI SQAMAQEEEQ LLKLREDEER AKCAESGEAP DLNDTQFTKL
101: DELLTQTQLY SEFLLEKMED ITKNGIESET QKAEPEKKGG RGRKRKAASQ AATMKAKKAV AAMISRSKEG HESANSDLTE EERVIKEQSE LVPLLTGGKL
201: KSYQLKGVKW LISLWQNGLN GILADQMGLG KTIQTIGFLS HLKGNGLDGP YLVIAPLSTL SNWMNEIARF TPSINAIIYH GDKKKRDELR RKHMPKTVGP
301: KFPIVITSYE VAMNDARKSL RHYPWKYVVI DEGHRLKNHQ CKLLRELRHM KMENKLLLTG TPLQNNLSEL WSLLNFILPD IFASHDEFES WFDFSEKNKS
401: EASKEEGEEK RRAQVVAKLH NILRPFILRR MKCDVELLLP RKKEIIIYAT MTDHQKNFQD HLVNRTLEAH LGENAIPGQG WKGKLNNLVI QLRKNCNHPD
501: LLAGQIDGSY FYPPIEDIVG QCGKFRLLER LLVRLFAKNH KVLVFTQWTK ILDIMDYYFS EKGFEVCRID GNVKLDERRR QIDEFNDEKS SCRIFLLSTR
601: AGGLGINLTA ADTCILYDSD WNPQMDLQAM DRCHRIGQTK PVHVYRLATA QSVEGRVLKR AYSKLKLEHV VIGKGQFHQE RAKSSIPLEE EDILALLKDD
701: ETAEDKLIQT DISEEDLDRL LDRSDLMITS PGETEPEAGE AFPVKGPGWE VVLPSSAGGM LSSLNS

Best Arabidopsis Sequence Match ( AT5G66750.1 )
(BLAST)

001: MVSLRSRKVI PASEMVSDGK TEKDASGDSP TSVLNEEENC EEKSVTVVEE EILLAKNGDS SLISEAMAQE EEQLLKLRED EEKANNAGSA VAPNLNETQF
101: TKLDELLTQT QLYSEFLLEK MEDITINGIE SESQKAEPEK TGRGRKRKAA SQYNNTKAKR AVAAMISRSK EDGETINSDL TEEETVIKLQ NELCPLLTGG
201: QLKSYQLKGV KWLISLWQNG LNGILADQMG LGKTIQTIGF LSHLKGNGLD GPYLVIAPLS TLSNWFNEIA RFTPSINAII YHGDKNQRDE LRRKHMPKTV
301: GPKFPIVITS YEVAMNDAKR ILRHYPWKYV VIDEGHRLKN HKCKLLRELK HLKMDNKLLL TGTPLQNNLS ELWSLLNFIL PDIFTSHDEF ESWFDFSEKN
401: KNEATKEEEE KRRAQVVSKL HGILRPFILR RMKCDVELSL PRKKEIIMYA TMTDHQKKFQ EHLVNNTLEA HLGENAIRGQ GWKGKLNNLV IQLRKNCNHP
501: DLLQGQIDGS YLYPPVEEIV GQCGKFRLLE RLLVRLFANN HKVLIFSQWT KLLDIMDYYF SEKGFEVCRI DGSVKLDERR RQIKDFSDEK SSCSIFLLST
601: RAGGLGINLT AADTCILYDS DWNPQMDLQA MDRCHRIGQT KPVHVYRLST AQSIETRVLK RAYSKLKLEH VVIGQGQFHQ ERAKSSTPLE EEDILALLKE
701: DETAEDKLIQ TDISDADLDR LLDRSDLTIT APGETQAAEA FPVKGPGWEV VLPSSGGMLS SLNS

Arabidopsis Description

DDM1ATP-dependent DNA helicase DDM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XFH4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.