CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007978_P003	Maize	cytosol	90.49	89.34
TraesCS7A01G074600.1	Wheat	cytosol	75.19	77.9
EER93549	Sorghum	cytosol	82.01	76.32
TraesCS2A01G368200.1	Wheat	cytosol	76.35	76.25
TraesCS7D01G069700.1	Wheat	cytosol	75.71	75.61
Os09t0442700-01	Rice	cytosol	81.62	75.15
Os03t0722400-01	Rice	cytosol	81.75	74.91
TraesCS2D01G365000.1	Wheat	cytosol	78.15	74.06
TraesCS2B01G385300.1	Wheat	cytosol	77.64	73.75
TraesCS4D01G053600.2	Wheat	cytosol	76.74	71.5
TraesCS4A01G261000.1	Wheat	cytosol	76.48	71.0
TraesCS4A01G372200.1	Wheat	cytosol, endoplasmic reticulum, nucleus	75.96	67.78
VIT_04s0023g01610.t01	Wine grape	cytosol	65.42	67.06
GSMUA_Achr3P26090_001	Banana	cytosol	65.04	66.67
PGSC0003DMT400040011	Potato	cytosol	64.27	66.31
PGSC0003DMT400038561	Potato	cytosol	64.4	65.92
TraesCS4B01G053600.1	Wheat	cytosol, plastid	76.61	65.78
Solyc02g062780.2.1	Tomato	cytosol	63.37	63.94
KRH28662	Soybean	cytosol	62.08	63.3
KRH76800	Soybean	cytosol	61.95	63.25
CDX81370	Canola	cytosol	61.95	62.92
CDY57125	Canola	cytosol	61.83	62.79
AT5G66750.1	Thale cress	cytosol	61.57	62.7
Bra012099.1-P	Field mustard	cytosol	62.08	62.65
CDY53848	Canola	cytosol	62.08	62.65
CDY30755	Canola	cytosol	62.08	62.4
Solyc02g085390.2.1	Tomato	cytosol	64.78	62.15
Bra037150.1-P	Field mustard	nucleus	61.83	40.12
KXG32501	Sorghum	nucleus	33.03	23.22
EES19009	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	32.78	22.63
OQU93492	Sorghum	cytosol	24.29	20.84
KXG26914	Sorghum	nucleus	25.32	20.29
KXG33813	Sorghum	nucleus	28.66	19.36
KXG19483	Sorghum	cytosol	28.66	16.84
OQU92590	Sorghum	nucleus	28.15	15.59
KXG36860	Sorghum	nucleus	31.36	14.13
OQU84199	Sorghum	nucleus	31.11	11.41
OQU85588	Sorghum	nucleus	29.05	11.15
KXG36264	Sorghum	nucleus	29.18	10.21
OQU76185	Sorghum	nucleus	32.26	6.2

Protein Annotations

MapMan:12.5.2.1	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	EntrezGene:8059897	UniProt:C5X8P4	ncoils:Coil
EnsemblPlants:EER97913	ProteinID:EER97913	ProteinID:EER97913.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR038718
InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799
PANTHER:PTHR10799:SF812	SMART:SM00487	SMART:SM00490	InterPro:SNF2-like_sf	InterPro:SNF2_N	EnsemblPlantsGene:SORBI_3002G021200
SUPFAM:SSF52540	UniParc:UPI0001A84007	RefSeq:XP_002461392.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:-:1957841..1964393

Molecular Weight (calculated)

88732.9 Da

IEP (calculated)

6.066

GRAVY (calculated)

-0.493

Length

778 amino acids

Sequence
(BLAST)

001: MGTLSMSDAI PAKNWDDSPV KFEANGGDAL PVLKEEERLL EPVKDELADG ILDSLPIDLE AKNGDASLIT EAMKKEEEEL EDTRLKAVEE EEARKREEAA
101: RLAFDPETRY NKLDELLSQT QLYSEFLLEN MDRIAEENVE TQAEEPQVEE KKKGRGRKRK AKPVYNDKKA KTAVAAMLTR SREDRLAEDC TLSEEERWEK
201: EQANLVPLLT GGKLKSYQIK GVKWLISLWQ NGLNGILADQ MGLGKTIQTI GFLAHLKGKG MHGPYLIIAP LSTLSNWVNE ISRFTPSLAS IIYHGDKAAR
301: AEIRRKFMPK NAGPDFPIVV TSYEMAMYDA KFLAVHRWKY VIVDEGHRLK NSKCLLLREL KRIPMDNKLL LTGTPLQNNL AELWSLLNFI LPDIFSSHQE
401: FESWFDFSGK GNGEKDEETD ENKRLHVVSK LHAILRPFLL RRMKEDVEQL LPRKKEIIIY ANMTEHQKQI QHHLVEKTFD NYLNEESDII LKRPGIKARL
501: HNLMIQLRKN CNHPDLLEAQ VDSIGLYPPV EKILEQCGKF QLFDRLLNYL IEQKHKVLVF SQWTKVLDII EYYLDSKGHD VCRIDGSVKL EERRRQIAEF
601: NDLNSSMRIF LLSTRAGGLG INLTSADTCI LYDSDWNPQM DLQAMDRCHR IGQTRPVHVY RLATSHSVEG RIIKKAFGKL KLEHVVIGKG QFEQERAKPN
701: VLNEGELLAL LKDEQDEEDR MIQTDISDED LLKLMDRSDL LGPPGGTNAT PLVPLKGPGW EVVVPTKSGG GMLSALTS

Best Arabidopsis Sequence Match ( AT5G66750.1 )
(BLAST)

001: MVSLRSRKVI PASEMVSDGK TEKDASGDSP TSVLNEEENC EEKSVTVVEE EILLAKNGDS SLISEAMAQE EEQLLKLRED EEKANNAGSA VAPNLNETQF
101: TKLDELLTQT QLYSEFLLEK MEDITINGIE SESQKAEPEK TGRGRKRKAA SQYNNTKAKR AVAAMISRSK EDGETINSDL TEEETVIKLQ NELCPLLTGG
201: QLKSYQLKGV KWLISLWQNG LNGILADQMG LGKTIQTIGF LSHLKGNGLD GPYLVIAPLS TLSNWFNEIA RFTPSINAII YHGDKNQRDE LRRKHMPKTV
301: GPKFPIVITS YEVAMNDAKR ILRHYPWKYV VIDEGHRLKN HKCKLLRELK HLKMDNKLLL TGTPLQNNLS ELWSLLNFIL PDIFTSHDEF ESWFDFSEKN
401: KNEATKEEEE KRRAQVVSKL HGILRPFILR RMKCDVELSL PRKKEIIMYA TMTDHQKKFQ EHLVNNTLEA HLGENAIRGQ GWKGKLNNLV IQLRKNCNHP
501: DLLQGQIDGS YLYPPVEEIV GQCGKFRLLE RLLVRLFANN HKVLIFSQWT KLLDIMDYYF SEKGFEVCRI DGSVKLDERR RQIKDFSDEK SSCSIFLLST
601: RAGGLGINLT AADTCILYDS DWNPQMDLQA MDRCHRIGQT KPVHVYRLST AQSIETRVLK RAYSKLKLEH VVIGQGQFHQ ERAKSSTPLE EEDILALLKE
701: DETAEDKLIQ TDISDADLDR LLDRSDLTIT APGETQAAEA FPVKGPGWEV VLPSSGGMLS SLNS

Arabidopsis Description

DDM1ATP-dependent DNA helicase DDM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XFH4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.