Factsheet for TraesCS4B01G053600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G053600.2	Wheat	cytosol	90.29	97.96
TraesCS4A01G261000.1	Wheat	cytosol	89.74	97.02
TraesCS2B01G385300.1	Wheat	cytosol	70.31	77.78
EER97913	Sorghum	cytosol	65.78	76.61
Os03t0722400-01	Rice	cytosol	70.42	75.15
EER93549	Sorghum	cytosol	69.21	75.0
Zm00001d007978_P003	Maize	cytosol	65.12	74.87
Os09t0442700-01	Rice	cytosol	68.98	73.96
Zm00001d033827_P006	Maize	cytosol	69.09	73.82
GSMUA_Achr3P26090_001	Banana	cytosol	57.28	68.38
PGSC0003DMT400040011	Potato	cytosol	56.84	68.3
VIT_04s0023g01610.t01	Wine grape	cytosol	56.73	67.72
PGSC0003DMT400038561	Potato	cytosol	55.85	66.58
Solyc02g062780.2.1	Tomato	cytosol	55.96	65.76
AT5G66750.1	Thale cress	cytosol	54.64	64.79
Bra012099.1-P	Field mustard	cytosol	54.86	64.46
CDY53848	Canola	cytosol	54.86	64.46
CDY30755	Canola	cytosol	54.97	64.34
CDX81370	Canola	cytosol	54.08	63.97
KRH28662	Soybean	cytosol	53.86	63.96
KRH76800	Soybean	cytosol	53.75	63.91
CDY57125	Canola	cytosol	53.75	63.58
Solyc02g085390.2.1	Tomato	cytosol	56.18	62.76
Bra037150.1-P	Field mustard	nucleus	54.53	41.2
TraesCS1B01G118900.2	Wheat	nucleus	29.25	23.96
TraesCS3B01G083400.1	Wheat	nucleus	29.8	23.81
TraesCS2B01G421200.3	Wheat	cytosol	22.96	23.34
TraesCS1B01G106900.4	Wheat	nucleus	28.15	22.47
TraesCS4B01G372600.1	Wheat	cytosol	20.64	21.2
TraesCS3B01G442200.1	Wheat	nucleus	24.28	19.11
TraesCS7B01G050100.3	Wheat	nucleus	24.06	16.09
TraesCS4B01G162000.1	Wheat	nucleus	24.72	14.97
TraesCS2B01G150500.1	Wheat	nucleus	27.15	14.24
TraesCS6B01G048200.2	Wheat	nucleus, plastid	26.6	10.9
TraesCS7B01G468100.1	Wheat	nucleus	25.83	10.78
TraesCS2B01G251900.1	Wheat	nucleus	24.5	9.91
TraesCS7B01G110600.1	Wheat	nucleus	27.7	7.42

Protein Annotations

MapMan:12.5.2.1	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR038718	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PANTHER:PTHR10799	PANTHER:PTHR10799:SF812	SMART:SM00487	SMART:SM00490	InterPro:SNF2-like_sf	InterPro:SNF2_N
SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS4B01G053600	EnsemblPlants:TraesCS4B01G053600.1	TIGR:cd00046	TIGR:cd00079	SEG:seg

Description

No Description!

Coordinates

chr4B:+:42317502..42324120

Molecular Weight (calculated)

101329.0 Da

IEP (calculated)

6.718

GRAVY (calculated)

-0.419

Length

906 amino acids

Sequence
(BLAST)

001: MIVVDPKVSG RFWHRAPCVY LGERGPQPFS PSVKTRTAPC ESPLPPPSPP PLPLSSTTAA RRRLRRSRGC CMTPLPHRQS ATSAPVAAAA EMVVAVANGA
101: KREAAAAANT TAAAAADADS PISVLEEEKM SGSKDGKAGE LKANGGEAHP IAEALKAEEE LLNSVKDETS VEPLDATSPL PIDLAAKNGD TSLITEVMTK
201: EEEEMYQARI KLEEEEEARK REEAARQAFD PNAKFSKLDE LLTQTQLYSE FLLEKMEQIT DVKPTAVEVK DEEEPVEEQK KGRGRKRKAA NKPQYNDKKA
301: KTAVAAMLSR SREDRSADDD TLTEEEKWER EQANLVPLLT GGKLKSYQIK GVKWLISLWQ NGLNGILADQ MGLGKTIQTI AFLAHLKGNG LHGPYMVIAP
401: LSTLSNWLNE LTRFAPSING LIYHGDKVAR TELRRKHMPK IVGPDFPIII TSYEMAMFDA KFLANYKWKY VVVDEGHRLK NTKCKLLREL RRIPMDNKLL
501: LTGTPLQNNL AELWSLLNFI LPDIFSSHEE FESWFDFSGK ADEELEEETD EKKRVLVVSK LHSILRPFLL RRMKEDVEHM LPRKKEIIIY ANMTEHQKQI
601: QSHLIEQTFD DYLHESADIV LRRPGIKTKL NNLLIQLRKN CGHPDLFHSA FDSNSLYPPV DKLLEQCGKF QLLDRLLNAL IKRNHKVLIF SQWTKILDIL
701: DYYLSEKGLK VCRIDGSVNL EVRRSQIAAF NDLNSGMNVF ILSTRAGGLG INLTSADTCI LYDSDWNPQM DLQAMDRCHR IGQTQPVHVY RLATSSSVEG
801: RIIKKAFGKL KLEHVVIGKG QFQQDAAKPN ALDEGELLAL LRDEQAEEDR MIQTDISDED LLKVMDRSDL TGARAAADAA PHFPLKGPGW EVVVAAGGGM
901: LSALTS

Best Arabidopsis Sequence Match ( AT5G66750.1 )
(BLAST)

001: MVSLRSRKVI PASEMVSDGK TEKDASGDSP TSVLNEEENC EEKSVTVVEE EILLAKNGDS SLISEAMAQE EEQLLKLRED EEKANNAGSA VAPNLNETQF
101: TKLDELLTQT QLYSEFLLEK MEDITINGIE SESQKAEPEK TGRGRKRKAA SQYNNTKAKR AVAAMISRSK EDGETINSDL TEEETVIKLQ NELCPLLTGG
201: QLKSYQLKGV KWLISLWQNG LNGILADQMG LGKTIQTIGF LSHLKGNGLD GPYLVIAPLS TLSNWFNEIA RFTPSINAII YHGDKNQRDE LRRKHMPKTV
301: GPKFPIVITS YEVAMNDAKR ILRHYPWKYV VIDEGHRLKN HKCKLLRELK HLKMDNKLLL TGTPLQNNLS ELWSLLNFIL PDIFTSHDEF ESWFDFSEKN
401: KNEATKEEEE KRRAQVVSKL HGILRPFILR RMKCDVELSL PRKKEIIMYA TMTDHQKKFQ EHLVNNTLEA HLGENAIRGQ GWKGKLNNLV IQLRKNCNHP
501: DLLQGQIDGS YLYPPVEEIV GQCGKFRLLE RLLVRLFANN HKVLIFSQWT KLLDIMDYYF SEKGFEVCRI DGSVKLDERR RQIKDFSDEK SSCSIFLLST
601: RAGGLGINLT AADTCILYDS DWNPQMDLQA MDRCHRIGQT KPVHVYRLST AQSIETRVLK RAYSKLKLEH VVIGQGQFHQ ERAKSSTPLE EEDILALLKE
701: DETAEDKLIQ TDISDADLDR LLDRSDLTIT APGETQAAEA FPVKGPGWEV VLPSSGGMLS SLNS

Arabidopsis Description

DDM1ATP-dependent DNA helicase DDM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XFH4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.