Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G403600.1 | Wheat | nucleus | 91.49 | 85.75 |
| Os01t0881000-00 | Rice | nucleus | 63.6 | 66.48 |
| KXG33813 | Sorghum | nucleus | 63.34 | 63.28 |
| TraesCS2B01G385300.1 | Wheat | cytosol | 19.37 | 27.23 |
| TraesCS4B01G053600.1 | Wheat | cytosol, plastid | 19.11 | 24.28 |
| TraesCS1B01G118900.2 | Wheat | nucleus | 21.81 | 22.69 |
| TraesCS1B01G106900.4 | Wheat | nucleus | 21.81 | 22.11 |
| TraesCS2B01G421200.3 | Wheat | cytosol | 17.12 | 22.11 |
| TraesCS4B01G372600.1 | Wheat | cytosol | 16.42 | 21.43 |
| TraesCS3B01G083400.1 | Wheat | nucleus | 20.42 | 20.72 |
| TraesCS7B01G050100.3 | Wheat | nucleus | 24.33 | 20.66 |
| TraesCS4B01G162000.1 | Wheat | nucleus | 20.16 | 15.51 |
| TraesCS2B01G150500.1 | Wheat | nucleus | 23.02 | 15.34 |
| TraesCS2B01G251900.1 | Wheat | nucleus | 22.59 | 11.6 |
| TraesCS6B01G048200.2 | Wheat | nucleus, plastid | 21.2 | 11.04 |
| TraesCS7B01G468100.1 | Wheat | nucleus | 18.16 | 9.63 |
| TraesCS7B01G110600.1 | Wheat | nucleus | 22.76 | 7.75 |
Protein Annotations
| Gene3D:2.40.50.40 | Gene3D:3.30.40.10 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:Chromo-like_dom_sf |
| InterPro:Chromo/chromo_shadow_dom | InterPro:Chromo_domain | InterPro:DNA/RNA_helicase_DEAH_CS | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR000953 | InterPro:IPR001650 | InterPro:IPR001841 |
| InterPro:IPR013083 | InterPro:IPR014001 | InterPro:IPR019787 | InterPro:IPR038718 | InterPro:P-loop_NTPase | PFAM:PF00176 |
| PFAM:PF00271 | PFAM:PF00385 | ScanProsite:PS00690 | ScanProsite:PS01359 | PFscan:PS50013 | PFscan:PS50016 |
| PFscan:PS50089 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF855 | SMART:SM00249 |
| SMART:SM00298 | SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 |
| SUPFAM:SSF54160 | SUPFAM:SSF57903 | EnsemblPlantsGene:TraesCS3B01G442200 | EnsemblPlants:TraesCS3B01G442200.1 | InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_FYVE_PHD |
| InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | TIGR:cd00024 | TIGR:cd00046 |
| TIGR:cd00079 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr3B:+:681499853..681509694
Molecular Weight (calculated)
130558.0 Da
IEP (calculated)
6.779
GRAVY (calculated)
-0.483
Length
1151 amino acids
Sequence
(BLAST)
(BLAST)
0001: MFDTSTNSLF VFAPDYCLII STKNLGRLRK RTAAGGAATS ELHEDELNVA DVKLSNDEVR GQMLPACRSS KRLCGQQIRK QDSVGREGED DVFADSKDGG
0101: QMLHPCRRSK RLQRNLAAKQ ELSSMESQHD VFVNSEDESK TLVQQRRPNR LRKRFISEYY SGELAEDKHT SRSSSDYDYD HLPPQRRSKR LRHRMRTTYD
0201: AFDDDSDSDS VDNHRKAIPC RRMSKRLQEK QKADNVSDEN CTEASSYMLS VSSSTGSDDE LLRSTVKPCK GTSSGPICSI CKSGAGSCLL IQCQNSSCSR
0301: SFHTFCLSPP MQDTKGILVC PLCKFDKASL SKGMEVYASK KIQRLVGCRR VILQESDFQY QILVKWQLLS HHHDCWVPLD WLLVFDRLRA QSYIRKNTLP
0401: KEVYTDDQRK PEWFEVDRAI ACHRKFDLGL CDVLASSKDN EDFEGYEFLV KWKGLDYCDA TWESYSTEGV QSAVSMLVKR HQNTSRRVDC VSPMNIEGMV
0501: SENVHNDALY DYQLQGLKWM FDNFKSRRSV ILADEMGLGK TVQVVSFLSH IIKGSFTTSP ALVLAPKSIL LQWKKEFDRW AHDLNIIVYQ GDKDSRKCIQ
0601: AHEMYSTEGK TLFDALVTSY EIIQIDKAVL QKIKWSMIVI DEAHRLKKLD CNLASCLKKY SSEFRLLLTG TPLQNNILEL FSLLHYIDPD EFSDPKADAL
0701: FSPIESELDL TIDEKIARIH DILKPRMLRR MKSDVLKDSM PTKKWVEVPC ALTDSQRDLY INILEKNYSK LNSAIQYGRK LSLNNVLMEL RKCCNHPYLF
0801: PGLEVKQHEG EDVFQSLVSA SGKLQLLDKL LPKLKERGNR VLIFSQMTKM LDILEDFLSF LGYKYARIDG QTALSARQES IKEYNNTESE TFIFLMSTRA
0901: GGLGIDLPGA NRVIIYDPDF NPFMDLQAQS RAHRIGQTRP VVVYQLITKC SVEEKILQKS KQKLAIENML MNSSNSKKPS VDELQSILLH GAKTIVDKKK
1001: INAVSIHYDD EAIESLLKLD PSSGEMCTSD DNGYLGSIVS FAHGAEDVVV PPSPNVDDLK VFKPLTPKVD LGRGRRQRNV VKYFEEVDHE DSDDMYAPEP
1101: SSESSSSSSD DETEQEIPEV AIARTEAAVQ TEAATVVKLE VPPVPGGPLS S
0101: QMLHPCRRSK RLQRNLAAKQ ELSSMESQHD VFVNSEDESK TLVQQRRPNR LRKRFISEYY SGELAEDKHT SRSSSDYDYD HLPPQRRSKR LRHRMRTTYD
0201: AFDDDSDSDS VDNHRKAIPC RRMSKRLQEK QKADNVSDEN CTEASSYMLS VSSSTGSDDE LLRSTVKPCK GTSSGPICSI CKSGAGSCLL IQCQNSSCSR
0301: SFHTFCLSPP MQDTKGILVC PLCKFDKASL SKGMEVYASK KIQRLVGCRR VILQESDFQY QILVKWQLLS HHHDCWVPLD WLLVFDRLRA QSYIRKNTLP
0401: KEVYTDDQRK PEWFEVDRAI ACHRKFDLGL CDVLASSKDN EDFEGYEFLV KWKGLDYCDA TWESYSTEGV QSAVSMLVKR HQNTSRRVDC VSPMNIEGMV
0501: SENVHNDALY DYQLQGLKWM FDNFKSRRSV ILADEMGLGK TVQVVSFLSH IIKGSFTTSP ALVLAPKSIL LQWKKEFDRW AHDLNIIVYQ GDKDSRKCIQ
0601: AHEMYSTEGK TLFDALVTSY EIIQIDKAVL QKIKWSMIVI DEAHRLKKLD CNLASCLKKY SSEFRLLLTG TPLQNNILEL FSLLHYIDPD EFSDPKADAL
0701: FSPIESELDL TIDEKIARIH DILKPRMLRR MKSDVLKDSM PTKKWVEVPC ALTDSQRDLY INILEKNYSK LNSAIQYGRK LSLNNVLMEL RKCCNHPYLF
0801: PGLEVKQHEG EDVFQSLVSA SGKLQLLDKL LPKLKERGNR VLIFSQMTKM LDILEDFLSF LGYKYARIDG QTALSARQES IKEYNNTESE TFIFLMSTRA
0901: GGLGIDLPGA NRVIIYDPDF NPFMDLQAQS RAHRIGQTRP VVVYQLITKC SVEEKILQKS KQKLAIENML MNSSNSKKPS VDELQSILLH GAKTIVDKKK
1001: INAVSIHYDD EAIESLLKLD PSSGEMCTSD DNGYLGSIVS FAHGAEDVVV PPSPNVDDLK VFKPLTPKVD LGRGRRQRNV VKYFEEVDHE DSDDMYAPEP
1101: SSESSSSSSD DETEQEIPEV AIARTEAAVQ TEAATVVKLE VPPVPGGPLS S
0001: MSSLVERLRI RSDRKPVYNL DDSDDDDFVP KKDRTFEQVE AIVRTDAKEN ACQACGESTN LVSCNTCTYA FHAKCLVPPL KDASVENWRC PECVSPLNEI
0101: DKILDCEMRP TKSSEQGSSD AEPKPIFVKQ YLVKWKGLSY LHCSWVPEKE FQKAYKSNHR LKTRVNNFHR QMESFNNSED DFVAIRPEWT TVDRILACRE
0201: EDGELEYLVK YKELSYDECY WESESDISTF QNEIQRFKDV NSRTRRSKDV DHKRNPRDFQ QFDHTPEFLK GLLHPYQLEG LNFLRFSWSK QTHVILADEM
0301: GLGKTIQSIA LLASLFEENL IPHLVIAPLS TLRNWEREFA TWAPQMNVVM YFGTAQARAV IREHEFYLSK DQKKIKKKKS GQISSESKQK RIKFDVLLTS
0401: YEMINLDSAV LKPIKWECMI VDEGHRLKNK DSKLFSSLTQ YSSNHRILLT GTPLQNNLDE LFMLMHFLDA GKFGSLEEFQ EEFKDINQEE QISRLHKMLA
0501: PHLLRRVKKD VMKDMPPKKE LILRVDLSSL QKEYYKAIFT RNYQVLTKKG GAQISLNNIM MELRKVCCHP YMLEGVEPVI HDANEAFKQL LESCGKLQLL
0601: DKMMVKLKEQ GHRVLIYTQF QHMLDLLEDY CTHKKWQYER IDGKVGGAER QIRIDRFNAK NSNKFCFLLS TRAGGLGINL ATADTVIIYD SDWNPHADLQ
0701: AMARAHRLGQ TNKVMIYRLI NRGTIEERMM QLTKKKMVLE HLVVGKLKTQ NINQEELDDI IRYGSKELFA SEDDEAGKSG KIHYDDAAID KLLDRDLVEA
0801: EEVSVDDEEE NGFLKAFKVA NFEYIDENEA AALEAQRVAA ESKSSAGNSD RASYWEELLK DKFELHQAEE LNALGKRKRS RKQLVSIEED DLAGLEDVSS
0901: DGDESYEAES TDGEAAGQGV QTGRRPYRRK GRDNLEPTPL MEGEGRSFRV LGFNQSQRAI FVQTLMRYGA GNFDWKEFVP RLKQKTFEEI NEYGILFLKH
1001: IAEEIDENSP TFSDGVPKEG LRIEDVLVRI ALLILVQEKV KFVEDHPGKP VFPSRILERF PGLRSGKIWK EEHDKIMIRA VLKHGYGRWQ AIVDDKELGI
1101: QELICKELNF PHISLSAAEQ AGLQGQNGSG GSNPGAQTNQ NPGSVITGNN NASADGAQVN SMFYYRDMQR RLVEFVKKRV LLLEKAMNYE YAEEYYGLGG
1201: SSSIPTEEPE AEPKIADTVG VSFIEVDDEM LDGLPKTDPI TSEEIMGAAV DNNQARVEIA QHYNQMCKLL DENARESVQA YVNNQPPSTK VNESFRALKS
1301: INGNINTILS ITSDQSKSHE DDTKPDLNNV EMKDTAEETK PLRGGVVDLN VVEGEENIAE ASGSVDVKME EAKEEEKPKN MVVD
0101: DKILDCEMRP TKSSEQGSSD AEPKPIFVKQ YLVKWKGLSY LHCSWVPEKE FQKAYKSNHR LKTRVNNFHR QMESFNNSED DFVAIRPEWT TVDRILACRE
0201: EDGELEYLVK YKELSYDECY WESESDISTF QNEIQRFKDV NSRTRRSKDV DHKRNPRDFQ QFDHTPEFLK GLLHPYQLEG LNFLRFSWSK QTHVILADEM
0301: GLGKTIQSIA LLASLFEENL IPHLVIAPLS TLRNWEREFA TWAPQMNVVM YFGTAQARAV IREHEFYLSK DQKKIKKKKS GQISSESKQK RIKFDVLLTS
0401: YEMINLDSAV LKPIKWECMI VDEGHRLKNK DSKLFSSLTQ YSSNHRILLT GTPLQNNLDE LFMLMHFLDA GKFGSLEEFQ EEFKDINQEE QISRLHKMLA
0501: PHLLRRVKKD VMKDMPPKKE LILRVDLSSL QKEYYKAIFT RNYQVLTKKG GAQISLNNIM MELRKVCCHP YMLEGVEPVI HDANEAFKQL LESCGKLQLL
0601: DKMMVKLKEQ GHRVLIYTQF QHMLDLLEDY CTHKKWQYER IDGKVGGAER QIRIDRFNAK NSNKFCFLLS TRAGGLGINL ATADTVIIYD SDWNPHADLQ
0701: AMARAHRLGQ TNKVMIYRLI NRGTIEERMM QLTKKKMVLE HLVVGKLKTQ NINQEELDDI IRYGSKELFA SEDDEAGKSG KIHYDDAAID KLLDRDLVEA
0801: EEVSVDDEEE NGFLKAFKVA NFEYIDENEA AALEAQRVAA ESKSSAGNSD RASYWEELLK DKFELHQAEE LNALGKRKRS RKQLVSIEED DLAGLEDVSS
0901: DGDESYEAES TDGEAAGQGV QTGRRPYRRK GRDNLEPTPL MEGEGRSFRV LGFNQSQRAI FVQTLMRYGA GNFDWKEFVP RLKQKTFEEI NEYGILFLKH
1001: IAEEIDENSP TFSDGVPKEG LRIEDVLVRI ALLILVQEKV KFVEDHPGKP VFPSRILERF PGLRSGKIWK EEHDKIMIRA VLKHGYGRWQ AIVDDKELGI
1101: QELICKELNF PHISLSAAEQ AGLQGQNGSG GSNPGAQTNQ NPGSVITGNN NASADGAQVN SMFYYRDMQR RLVEFVKKRV LLLEKAMNYE YAEEYYGLGG
1201: SSSIPTEEPE AEPKIADTVG VSFIEVDDEM LDGLPKTDPI TSEEIMGAAV DNNQARVEIA QHYNQMCKLL DENARESVQA YVNNQPPSTK VNESFRALKS
1301: INGNINTILS ITSDQSKSHE DDTKPDLNNV EMKDTAEETK PLRGGVVDLN VVEGEENIAE ASGSVDVKME EAKEEEKPKN MVVD
Arabidopsis Description
PKLchromatin remodeling factor CHD3 (PICKLE) [Source:TAIR;Acc:AT2G25170]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.