Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G147100.2 | Wheat | nucleus | 99.19 | 98.9 |
| TraesCS7D01G148900.4 | Wheat | nucleus | 95.28 | 91.89 |
| KXG19483 | Sorghum | cytosol | 77.12 | 78.93 |
| Zm00001d045109_P008 | Maize | cytosol | 76.46 | 77.66 |
| Solyc08g029120.1.1 | Tomato | nucleus | 33.65 | 64.59 |
| GSMUA_Achr4P21270_001 | Banana | cytosol | 60.07 | 59.03 |
| KRH05279 | Soybean | nucleus | 19.26 | 57.62 |
| CDY56279 | Canola | cytosol | 55.2 | 55.7 |
| Bra007814.1-P | Field mustard | nucleus | 55.35 | 54.95 |
| VIT_04s0008g05880.t01 | Wine grape | nucleus | 58.89 | 54.21 |
| KRH61691 | Soybean | nucleus | 57.42 | 53.95 |
| CDX76767 | Canola | cytosol, nucleus, plastid | 54.61 | 53.78 |
| KRH52357 | Soybean | nucleus | 56.75 | 53.4 |
| AT2G25170.3 | Thale cress | endoplasmic reticulum | 55.5 | 53.33 |
| CDX75208 | Canola | cytosol | 45.61 | 51.67 |
| Solyc06g065730.2.1 | Tomato | nucleus | 54.17 | 51.08 |
| CDX68802 | Canola | cytosol | 45.68 | 50.99 |
| Bra011311.1-P | Field mustard | nucleus | 45.68 | 50.99 |
| AT4G31900.1 | Thale cress | nucleus | 42.66 | 48.09 |
| TraesCS2B01G385300.1 | Wheat | cytosol | 15.94 | 26.37 |
| TraesCS1B01G118900.2 | Wheat | nucleus | 20.74 | 25.41 |
| TraesCS3B01G083400.1 | Wheat | nucleus | 20.89 | 24.96 |
| TraesCS3B01G442200.1 | Wheat | nucleus | 20.66 | 24.33 |
| TraesCS4B01G372600.1 | Wheat | cytosol | 15.79 | 24.26 |
| TraesCS4B01G053600.1 | Wheat | cytosol, plastid | 16.09 | 24.06 |
| TraesCS1B01G106900.4 | Wheat | nucleus | 18.67 | 22.29 |
| TraesCS2B01G421200.3 | Wheat | cytosol | 13.73 | 20.88 |
| TraesCS2B01G150500.1 | Wheat | nucleus | 24.13 | 18.92 |
| TraesCS2B01G251900.1 | Wheat | nucleus | 26.27 | 15.89 |
| TraesCS4B01G162000.1 | Wheat | nucleus | 17.42 | 15.78 |
| TraesCS7B01G468100.1 | Wheat | nucleus | 19.63 | 12.25 |
| TraesCS6B01G048200.2 | Wheat | nucleus, plastid | 17.93 | 11.0 |
| TraesCS7B01G110600.1 | Wheat | nucleus | 18.89 | 7.57 |
Protein Annotations
| MapMan:12.4.1.1.5 | Gene3D:2.40.50.40 | Gene3D:3.30.40.10 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | InterPro:Chromo-like_dom_sf |
| InterPro:Chromo/chromo_shadow_dom | InterPro:Chromo_domain | ncoils:Coil | InterPro:DUF1086 | InterPro:DUF1087 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR000953 |
| InterPro:IPR001650 | InterPro:IPR013083 | InterPro:IPR014001 | InterPro:IPR019787 | InterPro:IPR038718 | InterPro:P-loop_NTPase |
| PFAM:PF00176 | PFAM:PF00271 | PFAM:PF00385 | PFAM:PF06461 | PFAM:PF06465 | ScanProsite:PS01359 |
| PFscan:PS50013 | PFscan:PS50016 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF853 |
| SMART:SM00249 | SMART:SM00298 | SMART:SM00487 | SMART:SM00490 | SMART:SM01146 | SMART:SM01147 |
| InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 | SUPFAM:SSF54160 | EnsemblPlantsGene:TraesCS7B01G050100 | EnsemblPlants:TraesCS7B01G050100.3 |
| InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | TIGR:cd00024 | TIGR:cd00046 |
| TIGR:cd00079 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr7B:-:51067979..51087946
Molecular Weight (calculated)
154993.0 Da
IEP (calculated)
5.657
GRAVY (calculated)
-0.679
Length
1355 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSSLVERLRV RSDKRPRYTL DESDDDFPPR GGNGKGKDRD GDPPVKQIER EDAKEDACRK CGLSDNLVSC TTCTYAFHRK CLVPCLNITS DKWSCPECVS
0101: PLTEMEKILD CETKVASEET SSSESGSNKK PVKQYLIKWK GLSHIHCTWV SEDEYFEAAK IHPRLKTRLN NFNRQFESTD KSDDDYVPIR PEWTTVDRVL
0201: ASRKNSSGER EYYVKWKELS YDECTWESES DISVFQPQIE RYNEILSRRK KSTDKSKNAD RAMRHAEQTP EFLTGGTLHP YQLEGLNFLR YSWSINKRVI
0301: LGDEMGLGKT IQSIAFLASV SEDKFGPHLV VAPLSTLRNW EREFATWAPQ MNVIMYFGSG SSRDIIKKYE FYYSKDNPKK LKKNKSSSSN DEKKESRIKF
0401: DVLLTSYEMI NMDSAVLKTI EWECMIVDEG HRLKNKDSKL FGLLKDYHTQ HRVLLTGTPV QNNLDELFML MHFLEGETFG SISDLQEEFK DINQDKQVEK
0501: LHGMLKPHLL RRFKKDVMKE LPPKKELILR VELTSKQKEY YKAILTKNYA VLSRRGGGHV SLINVVMELR KLCCHGFMTD EPDTEPASPE EGLRRLLDSS
0601: GKMQLLDKMM VKLKEQGHRV LIYSQFQHML DLLEDYLSYR KWSYERIDGK IGGAERQIRI DRFNAKTSTR FCFLLSTRAG GLGINLATAD TVIIYDSDWN
0701: PHADLQAMAR AHRLGQTSKV MIYRLVSRGT IEERMMQLTK KKMILEHLVV GRLTKASNVN QEELDDIIRY GSKELFDDEE DEAGKSRQIH YDDAAIDRLL
0801: DRDQVDEEEY LEDEEDDEFL KGFKVANFEY IDEAKALAAK EEARKKAEAE AASNKANYWE ELLKDRCVEQ EVEEIAMGKG KRSRKQMAAA DEDDITGLHE
0901: LSSEDEDYSY DDDVSDNDTS LPANVSGRKA QYSKKNSRNV DSLPLMEGEG RALKVYGFNH VQRTQFLQTL MRYGFQNYDW KEYLPRLKGK SVEEIQSYVT
1001: KTLDKITCNQ RDLICHFTKY GELVMAHLVE DTNDSPTYAD GVPKEMRADE TLVRLAKISL VEEKVAAMEQ GKITKLFPNY LLHEFTGLSG GRIWKGEHDL
1101: LLLKALIKHG YARWQYISDD RDNGLFETAR RELNLPSANE LISSQSNNEA NGNLESTQEV QVNPTSLSQY RDIQRKIVEF IRKRYHILEK CLDLEYAVIK
1201: TNTPVPDDLT EQNIPMGHSP AVPDISEVLR ELPPLVPISA KEVASDGSTD QAHLSHLYNK MCGVLEDSGP RALNSFCGDK AASASLANSL HQFEKVCEDV
1301: DRVLRVQENG AATPKEQVVD ASVEEAKPPQ DAGVAAANGV GPSTVKPEDK MEIDG
0101: PLTEMEKILD CETKVASEET SSSESGSNKK PVKQYLIKWK GLSHIHCTWV SEDEYFEAAK IHPRLKTRLN NFNRQFESTD KSDDDYVPIR PEWTTVDRVL
0201: ASRKNSSGER EYYVKWKELS YDECTWESES DISVFQPQIE RYNEILSRRK KSTDKSKNAD RAMRHAEQTP EFLTGGTLHP YQLEGLNFLR YSWSINKRVI
0301: LGDEMGLGKT IQSIAFLASV SEDKFGPHLV VAPLSTLRNW EREFATWAPQ MNVIMYFGSG SSRDIIKKYE FYYSKDNPKK LKKNKSSSSN DEKKESRIKF
0401: DVLLTSYEMI NMDSAVLKTI EWECMIVDEG HRLKNKDSKL FGLLKDYHTQ HRVLLTGTPV QNNLDELFML MHFLEGETFG SISDLQEEFK DINQDKQVEK
0501: LHGMLKPHLL RRFKKDVMKE LPPKKELILR VELTSKQKEY YKAILTKNYA VLSRRGGGHV SLINVVMELR KLCCHGFMTD EPDTEPASPE EGLRRLLDSS
0601: GKMQLLDKMM VKLKEQGHRV LIYSQFQHML DLLEDYLSYR KWSYERIDGK IGGAERQIRI DRFNAKTSTR FCFLLSTRAG GLGINLATAD TVIIYDSDWN
0701: PHADLQAMAR AHRLGQTSKV MIYRLVSRGT IEERMMQLTK KKMILEHLVV GRLTKASNVN QEELDDIIRY GSKELFDDEE DEAGKSRQIH YDDAAIDRLL
0801: DRDQVDEEEY LEDEEDDEFL KGFKVANFEY IDEAKALAAK EEARKKAEAE AASNKANYWE ELLKDRCVEQ EVEEIAMGKG KRSRKQMAAA DEDDITGLHE
0901: LSSEDEDYSY DDDVSDNDTS LPANVSGRKA QYSKKNSRNV DSLPLMEGEG RALKVYGFNH VQRTQFLQTL MRYGFQNYDW KEYLPRLKGK SVEEIQSYVT
1001: KTLDKITCNQ RDLICHFTKY GELVMAHLVE DTNDSPTYAD GVPKEMRADE TLVRLAKISL VEEKVAAMEQ GKITKLFPNY LLHEFTGLSG GRIWKGEHDL
1101: LLLKALIKHG YARWQYISDD RDNGLFETAR RELNLPSANE LISSQSNNEA NGNLESTQEV QVNPTSLSQY RDIQRKIVEF IRKRYHILEK CLDLEYAVIK
1201: TNTPVPDDLT EQNIPMGHSP AVPDISEVLR ELPPLVPISA KEVASDGSTD QAHLSHLYNK MCGVLEDSGP RALNSFCGDK AASASLANSL HQFEKVCEDV
1301: DRVLRVQENG AATPKEQVVD ASVEEAKPPQ DAGVAAANGV GPSTVKPEDK MEIDG
0001: MILRVFSNFS LVLFHKKMSS LVERLRIRSD RKPVYNLDDS DDDDFVPKKD RTFEQVEAIV RTDAKENACQ ACGESTNLVS CNTCTYAFHA KCLVPPLKDA
0101: SVENWRCPEC VSPLNEIDKI LDCEMRPTKS SEQGSSDAEP KPIFVKQYLV KWKGLSYLHC SWVPEKEFQK AYKSNHRLKT RVNNFHRQME SFNNSEDDFV
0201: AIRPEWTTVD RILACREEDG ELEYLVKYKE LSYDECYWES ESDISTFQNE IQRFKDVNSR TRRSKDVDHK RNPRDFQQFD HTPEFLKGLL HPYQLEGLNF
0301: LRFSWSKQTH VILADEMGLG KTIQSIALLA SLFEENLIPH LVIAPLSTLR NWEREFATWA PQMNVVMYFG TAQARAVIRE HEFYLSKDQK KIKKKKSGQI
0401: SSESKQKRIK FDVLLTSYEM INLDSAVLKP IKWECMIVDE GHRLKNKDSK LFSSLTQYSS NHRILLTGTP LQNNLDELFM LMHFLDAGKF GSLEEFQEEF
0501: KDINQEEQIS RLHKMLAPHL LRRVKKDVMK DMPPKKELIL RVDLSSLQKE YYKAIFTRNY QVLTKKGGAQ ISLNNIMMEL RKVCCHPYML EGVEPVIHDA
0601: NEAFKQLLES CGKLQLLDKM MVKLKEQGHR VLIYTQFQHM LDLLEDYCTH KKWQYERIDG KVGGAERQIR IDRFNAKNSN KFCFLLSTRA GGLGINLATA
0701: DTVIIYDSDW NPHADLQAMA RAHRLGQTNK VMIYRLINRG TIEERMMQLT KKKMVLEHLV VGKLKTQNIN QEELDDIIRY GSKELFASED DEAGKSGKIH
0801: YDDAAIDKLL DRDLVEAEEV SVDDEEENGF LKAFKVANFE YIDENEAAAL EAQRVAAESK SSAGNSDRAS YWEELLKDKF ELHQAEELNA LGKRKRSRKQ
0901: LVSIEEDDLA GLEDVSSDGD ESYEAESTDG EAAGQGVQTG RRPYRRKGRD NLEPTPLMEG EGRSFRVLGF NQSQRAIFVQ TLMRYGAGNF DWKEFVPRLK
1001: QKTFEEINEY GILFLKHIAE EIDENSPTFS DGVPKEGLRI EDVLVRIALL ILVQEKVKFV EDHPGKPVFP SRILERFPGL RSGKIWKEEH DKIMIRAVLK
1101: HGYGRWQAIV DDKELGIQEL ICKELNFPHI SLSAAEQAGL QGQNGSGGSN PGAQTNQNPG SVITGNNNAS ADGAQVNSMF YYRDMQRRLV EFVKKRVLLL
1201: EKAMNYEYAE EYYGLGGSSS IPTEEPEAEP KIADTVGVSF IEVDDEMLDG LPKTDPITSE EIMGAAVDNN QARVEIAQHY NQMCKLLDEN ARESVQAYVN
1301: NQPPSTKVNE SFRALKSING NINTILSITS DQSKSHEDDT KPDLNNVEMK DTAEETKPLR GGVVDLNVVE GEENIAEASG SVDVKMEEAK EEEKPKNMVV
1401: D
0101: SVENWRCPEC VSPLNEIDKI LDCEMRPTKS SEQGSSDAEP KPIFVKQYLV KWKGLSYLHC SWVPEKEFQK AYKSNHRLKT RVNNFHRQME SFNNSEDDFV
0201: AIRPEWTTVD RILACREEDG ELEYLVKYKE LSYDECYWES ESDISTFQNE IQRFKDVNSR TRRSKDVDHK RNPRDFQQFD HTPEFLKGLL HPYQLEGLNF
0301: LRFSWSKQTH VILADEMGLG KTIQSIALLA SLFEENLIPH LVIAPLSTLR NWEREFATWA PQMNVVMYFG TAQARAVIRE HEFYLSKDQK KIKKKKSGQI
0401: SSESKQKRIK FDVLLTSYEM INLDSAVLKP IKWECMIVDE GHRLKNKDSK LFSSLTQYSS NHRILLTGTP LQNNLDELFM LMHFLDAGKF GSLEEFQEEF
0501: KDINQEEQIS RLHKMLAPHL LRRVKKDVMK DMPPKKELIL RVDLSSLQKE YYKAIFTRNY QVLTKKGGAQ ISLNNIMMEL RKVCCHPYML EGVEPVIHDA
0601: NEAFKQLLES CGKLQLLDKM MVKLKEQGHR VLIYTQFQHM LDLLEDYCTH KKWQYERIDG KVGGAERQIR IDRFNAKNSN KFCFLLSTRA GGLGINLATA
0701: DTVIIYDSDW NPHADLQAMA RAHRLGQTNK VMIYRLINRG TIEERMMQLT KKKMVLEHLV VGKLKTQNIN QEELDDIIRY GSKELFASED DEAGKSGKIH
0801: YDDAAIDKLL DRDLVEAEEV SVDDEEENGF LKAFKVANFE YIDENEAAAL EAQRVAAESK SSAGNSDRAS YWEELLKDKF ELHQAEELNA LGKRKRSRKQ
0901: LVSIEEDDLA GLEDVSSDGD ESYEAESTDG EAAGQGVQTG RRPYRRKGRD NLEPTPLMEG EGRSFRVLGF NQSQRAIFVQ TLMRYGAGNF DWKEFVPRLK
1001: QKTFEEINEY GILFLKHIAE EIDENSPTFS DGVPKEGLRI EDVLVRIALL ILVQEKVKFV EDHPGKPVFP SRILERFPGL RSGKIWKEEH DKIMIRAVLK
1101: HGYGRWQAIV DDKELGIQEL ICKELNFPHI SLSAAEQAGL QGQNGSGGSN PGAQTNQNPG SVITGNNNAS ADGAQVNSMF YYRDMQRRLV EFVKKRVLLL
1201: EKAMNYEYAE EYYGLGGSSS IPTEEPEAEP KIADTVGVSF IEVDDEMLDG LPKTDPITSE EIMGAAVDNN QARVEIAQHY NQMCKLLDEN ARESVQAYVN
1301: NQPPSTKVNE SFRALKSING NINTILSITS DQSKSHEDDT KPDLNNVEMK DTAEETKPLR GGVVDLNVVE GEENIAEASG SVDVKMEEAK EEEKPKNMVV
1401: D
Arabidopsis Description
PKLchromatin remodeling factor CHD3 (PICKLE) [Source:TAIR;Acc:AT2G25170]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.