Factsheet for VIT_04s0008g05880.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g029120.1.1	Tomato	nucleus	39.74	82.86
KRH05279	Soybean	nucleus	23.98	77.92
KRH61691	Soybean	nucleus	76.09	77.67
KRH52357	Soybean	nucleus	75.34	77.01
Solyc06g065730.2.1	Tomato	nucleus	69.84	71.54
CDY56279	Canola	cytosol	64.27	70.44
Bra007814.1-P	Field mustard	nucleus	64.74	69.82
CDX76767	Canola	cytosol, nucleus, plastid	64.4	68.9
AT2G25170.3	Thale cress	endoplasmic reticulum	65.62	68.51
GSMUA_Achr4P21270_001	Banana	cytosol	59.99	64.03
CDX75208	Canola	cytosol	49.32	60.7
CDX68802	Canola	cytosol	49.52	60.05
KXG19483	Sorghum	cytosol	53.87	59.89
Bra011311.1-P	Field mustard	nucleus	49.25	59.72
TraesCS7B01G050100.3	Wheat	nucleus	54.21	58.89
Zm00001d045109_P008	Maize	cytosol	53.19	58.7
TraesCS7A01G147100.2	Wheat	nucleus	54.14	58.65
AT4G31900.1	Thale cress	nucleus	47.49	58.15
TraesCS7D01G148900.4	Wheat	nucleus	53.4	55.94
VIT_04s0023g01610.t01	Wine grape	cytosol	15.9	30.83
VIT_15s0021g02180.t01	Wine grape	cytosol	16.37	28.19
VIT_01s0010g02080.t01	Wine grape	cytosol	13.25	26.79
VIT_05s0020g01780.t01	Wine grape	nucleus	19.36	26.39
VIT_05s0020g02960.t01	Wine grape	nucleus	18.14	24.21
VIT_06s0009g03750.t01	Wine grape	nucleus	23.23	19.4
VIT_01s0011g01480.t01	Wine grape	nucleus	27.11	18.5
VIT_08s0007g09020.t01	Wine grape	nucleus	17.53	16.57
VIT_08s0007g06370.t01	Wine grape	nucleus	19.7	14.13
VIT_15s0046g02290.t01	Wine grape	plastid	17.6	11.45
VIT_05s0020g02020.t01	Wine grape	nucleus	18.14	9.99

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100261114	wikigene:100261114	MapMan:12.4.1.1.5	Gene3D:2.40.50.40	Gene3D:3.30.40.10
Gene3D:3.40.50.10810	Gene3D:3.40.50.300	EMBL:AM468251	ProteinID:CAN81394	ProteinID:CAN81394.1	ProteinID:CCB46826
ProteinID:CCB46826.1	InterPro:Chromo-like_dom_sf	InterPro:Chromo/chromo_shadow_dom	InterPro:Chromo_domain	ncoils:Coil	InterPro:DUF1086
InterPro:DUF1087	UniProt:F6H3J1	EMBL:FN595231	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005506	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0046872	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR000953	InterPro:IPR001650	InterPro:IPR013083
InterPro:IPR014001	InterPro:IPR019787	InterPro:IPR024934	InterPro:IPR038718	EntrezGene:LOC100261114	wikigene:LOC100261114
InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFAM:PF00385	PFAM:PF00628	PFAM:PF06461
PFAM:PF06465	ScanProsite:PS01359	PFscan:PS50013	PFscan:PS50016	PFscan:PS50903	PFscan:PS51192
PFscan:PS51194	PANTHER:PTHR10799	PANTHER:PTHR10799:SF853	InterPro:Rubredoxin-like_dom	InterPro:SANT/Myb	SMART:SM00249
SMART:SM00298	SMART:SM00487	SMART:SM00490	SMART:SM01146	SMART:SM01147	InterPro:SNF2-like_sf
InterPro:SNF2_N	SUPFAM:SSF52540	SUPFAM:SSF54160	UniParc:UPI000210922E	ArrayExpress:VIT_04s0008g05880	EnsemblPlantsGene:VIT_04s0008g05880
EnsemblPlants:VIT_04s0008g05880.t01	unigene:Vvi.14380	RefSeq:XP_002282918	RefSeq:XP_002282918.2	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_PHD
InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4:+:5521511..5591646

Molecular Weight (calculated)

167637.0 Da

IEP (calculated)

5.247

GRAVY (calculated)

-0.619

Length

1472 amino acids

Sequence
(BLAST)

0001: MSSLVERLRV RSDRRPIYNL DESDDDADLV HGKSGMSQEK FEKIVRSDAK DDSCQACGES GNLLSCETCT YAYHPKCLLP PLKAPLPSNW RCPQCVSPLN
0101: DIDKILDCEM RPTVAGDSDA SKLGSKQIFV KQYLVKWKGL SYLHCTWVPE KEFIKAFKTH PRLKTKVNNF NRQMASNNNS EEDFVAVRPE WTTVDRIIAC
0201: RGNDDEREYL VKWKELSYDE CYWEFESDIS AFQPEIERFN KIQSRSRKLS SSKQKVTIRD ISDSKRKQRE FQQFEHSPEF LSGGSLHPYQ LEGLNFLRFS
0301: WGKQTHVILA DEMGLGKTIQ SIAFLASLFE ENVSPHLVVA PLSTLRNWER EFATWAPQMN VVMYVGSSHA RSVIRDYEFY FPKSHKKIKK KKSGQIVTES
0401: KQDRIKFDVL LTSYEMINLD SASLKPIKWE CMIVDEGHRL KNKDSKLFLS LKQYLSKHRV LLTGTPLQNN LDELFMLMHF LDAGKFGSLE EFQEEFKDIN
0501: QEEQISRLHK MLAPHLLRRV KKDVMKELPP KKELILRVEL SSKQKEYYKA ILTRNYQILT RRGGAQISLI NVVMELRKLC CHPYMLEGVE PDIEDATEAY
0601: KLLLESSGKL QLLDKMMVKL KEQGHRVLIY SQFQHMLDLL EDYCTYKKWQ YERIDGKVGG AERQVRIDRF NAKNSSRFCF LLSTRAGGLG INLATADTVI
0701: IYDSDWNPHA DLQAMARAHR LGQTNKVLIY RLITRGTIEE RMMQMTKKKM VLEHLVVGRL KAQNINQEEL DDIIRYGSKE LFADENDEAG KSRQIHYDDA
0801: AIDRLLDREQ VGDEEATLDD DEDDGFLKAF KVANFEYIDE VEAVVEEEVQ KAPVENKAAV NNSERTSYWE ELLRDRYEVH KIEEFNALGK GKRSRKQMVS
0901: VEEDDLAGLE DISSEGEDDN YEADLTDGET TSAGVPSGRK PYRKKARVDN MEPLPLMEGE GRSFRVLGFN QNQRAAFVQV LMRFGVGEFD WAEFTPRLKQ
1001: KTFEEIKDYG TLFLAHISED ITDSPTFSDG VPKEGLRIPD VLVRIAVLLL VRDKVKLALE KPGAPLFEDD IVSRFPGLKG GRHWKEEHDL LLLRAVIKHG
1101: YGRWQAIVDD KDLKVQEVIC QEQNLPFINF PVPGGSQAPD GTHTANSEAP GNQTKGTGSG TDLAPDVTQG GTDASNRAQL YQDSSVLYHF REMQRRQVEF
1201: IKKRVLLLEK ALNTEYQKEY FGDIKSNEIA SEDPENEAKV IDISSPSNVE VDAQIMDQLP RIEVIASEEI SATACDDKPE RAEMARLYNE MCKVLAENVH
1301: ESVQSYLANQ PASLQLRKKL LPLEAICEDI NRILSPQLQN PATSEQTLLG SNQQSLAEAP TSVAGSSSPS IQQQDDQRPS AEQDTEMRDA LTKSDPRKDS
1401: SQSTKSDSEK ESSKSPCDVP TSADSHSPQV EPTCVPAGTG EDVEMEEKKN EADAAPDGSK HKSEPGIIIL DD

Best Arabidopsis Sequence Match ( AT2G25170.2 )
(BLAST)

0001: MILRVFSNFS LVLFHKKMSS LVERLRIRSD RKPVYNLDDS DDDDFVPKKD RTFEQVEAIV RTDAKENACQ ACGESTNLVS CNTCTYAFHA KCLVPPLKDA
0101: SVENWRCPEC VSPLNEIDKI LDCEMRPTKS SEQGSSDAEP KPIFVKQYLV KWKGLSYLHC SWVPEKEFQK AYKSNHRLKT RVNNFHRQME SFNNSEDDFV
0201: AIRPEWTTVD RILACREEDG ELEYLVKYKE LSYDECYWES ESDISTFQNE IQRFKDVNSR TRRSKDVDHK RNPRDFQQFD HTPEFLKGLL HPYQLEGLNF
0301: LRFSWSKQTH VILADEMGLG KTIQSIALLA SLFEENLIPH LVIAPLSTLR NWEREFATWA PQMNVVMYFG TAQARAVIRE HEFYLSKDQK KIKKKKSGQI
0401: SSESKQKRIK FDVLLTSYEM INLDSAVLKP IKWECMIVDE GHRLKNKDSK LFSSLTQYSS NHRILLTGTP LQNNLDELFM LMHFLDAGKF GSLEEFQEEF
0501: KDINQEEQIS RLHKMLAPHL LRRVKKDVMK DMPPKKELIL RVDLSSLQKE YYKAIFTRNY QVLTKKGGAQ ISLNNIMMEL RKVCCHPYML EGVEPVIHDA
0601: NEAFKQLLES CGKLQLLDKM MVKLKEQGHR VLIYTQFQHM LDLLEDYCTH KKWQYERIDG KVGGAERQIR IDRFNAKNSN KFCFLLSTRA GGLGINLATA
0701: DTVIIYDSDW NPHADLQAMA RAHRLGQTNK VMIYRLINRG TIEERMMQLT KKKMVLEHLV VGKLKTQNIN QEELDDIIRY GSKELFASED DEAGKSGKIH
0801: YDDAAIDKLL DRDLVEAEEV SVDDEEENGF LKAFKVANFE YIDENEAAAL EAQRVAAESK SSAGNSDRAS YWEELLKDKF ELHQAEELNA LGKRKRSRKQ
0901: LVSIEEDDLA GLEDVSSDGD ESYEAESTDG EAAGQGVQTG RRPYRRKGRD NLEPTPLMEG EGRSFRVLGF NQSQRAIFVQ TLMRYGAGNF DWKEFVPRLK
1001: QKTFEEINEY GILFLKHIAE EIDENSPTFS DGVPKEGLRI EDVLVRIALL ILVQEKVKFV EDHPGKPVFP SRILERFPGL RSGKIWKEEH DKIMIRAVLK
1101: HGYGRWQAIV DDKELGIQEL ICKELNFPHI SLSAAEQAGL QGQNGSGGSN PGAQTNQNPG SVITGNNNAS ADGAQVNSMF YYRDMQRRLV EFVKKRVLLL
1201: EKAMNYEYAE EYYGLGGSSS IPTEEPEAEP KIADTVGVSF IEVDDEMLDG LPKTDPITSE EIMGAAVDNN QARVEIAQHY NQMCKLLDEN ARESVQAYVN
1301: NQPPSTKVNE SFRALKSING NINTILSITS DQSKSHEDDT KPDLNNVEMK DTAEETKPLR GGVVDLNVVE GEENIAEASG SVDVKMEEAK EEEKPKNMVV
1401: D

Arabidopsis Description

PKLchromatin remodeling factor CHD3 (PICKLE) [Source:TAIR;Acc:AT2G25170]
SUBAcon: [cytosol,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.