Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g029120.1.1 | Tomato | nucleus | 41.2 | 83.85 |
| KRH05279 | Soybean | nucleus | 23.1 | 73.29 |
| VIT_04s0008g05880.t01 | Wine grape | nucleus | 71.54 | 69.84 |
| KRH61691 | Soybean | nucleus | 68.06 | 67.82 |
| KRH52357 | Soybean | nucleus | 67.92 | 67.78 |
| CDY56279 | Canola | cytosol | 60.13 | 64.33 |
| Bra007814.1-P | Field mustard | nucleus | 60.47 | 63.66 |
| CDX76767 | Canola | cytosol, nucleus, plastid | 59.78 | 62.43 |
| AT2G25170.3 | Thale cress | endoplasmic reticulum | 60.75 | 61.91 |
| GSMUA_Achr4P21270_001 | Banana | cytosol | 56.58 | 58.96 |
| CDX75208 | Canola | cytosol | 48.23 | 57.94 |
| Bra011311.1-P | Field mustard | nucleus | 48.23 | 57.08 |
| CDX68802 | Canola | cytosol | 48.23 | 57.08 |
| KXG19483 | Sorghum | cytosol | 51.01 | 55.36 |
| Zm00001d045109_P008 | Maize | cytosol | 50.66 | 54.57 |
| TraesCS7B01G050100.3 | Wheat | nucleus | 51.08 | 54.17 |
| TraesCS7A01G147100.2 | Wheat | nucleus | 51.08 | 54.01 |
| AT4G31900.1 | Thale cress | nucleus | 44.95 | 53.74 |
| TraesCS7D01G148900.4 | Wheat | nucleus | 50.87 | 52.03 |
| Solyc01g090650.1.1 | Tomato | cytosol, nucleus, plastid | 14.13 | 33.12 |
| Solyc02g062780.2.1 | Tomato | cytosol | 16.08 | 29.96 |
| Solyc02g085390.2.1 | Tomato | cytosol | 16.01 | 28.36 |
| Solyc02g014770.2.1 | Tomato | nucleus | 13.57 | 26.42 |
| Solyc01g067390.2.1 | Tomato | nucleus | 19.14 | 25.82 |
| Solyc06g054560.2.1 | Tomato | nucleus | 19.0 | 25.73 |
| Solyc01g079690.2.1 | Tomato | nucleus | 17.54 | 25.33 |
| Solyc12g099910.1.1 | Tomato | nucleus | 23.66 | 19.92 |
| Solyc04g016370.2.1 | Tomato | nucleus | 17.54 | 16.37 |
| Solyc02g068560.2.1 | Tomato | nucleus | 26.24 | 15.82 |
| Solyc03g063220.1.1 | Tomato | nucleus | 16.77 | 14.99 |
| Solyc01g094800.2.1 | Tomato | nucleus | 17.19 | 11.05 |
| Solyc11g062010.1.1 | Tomato | nucleus | 19.35 | 10.42 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:12.4.1.1.5 | Gene3D:2.40.50.40 | Gene3D:3.30.40.10 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 |
| InterPro:Chromo-like_dom_sf | InterPro:Chromo/chromo_shadow_dom | InterPro:Chromo_domain | InterPro:DUF1086 | InterPro:DUF1087 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0046872 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR000953 | InterPro:IPR001650 |
| InterPro:IPR013083 | InterPro:IPR014001 | InterPro:IPR019787 | InterPro:IPR038718 | UniProt:K4C7K2 | InterPro:P-loop_NTPase |
| PFAM:PF00176 | PFAM:PF00271 | PFAM:PF00385 | PFAM:PF00628 | PFAM:PF06461 | PFAM:PF06465 |
| ScanProsite:PS01359 | PFscan:PS50013 | PFscan:PS50016 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR10799 |
| PANTHER:PTHR10799:SF853 | SMART:SM00249 | SMART:SM00298 | SMART:SM00487 | SMART:SM00490 | SMART:SM01146 |
| SMART:SM01147 | InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 | SUPFAM:SSF54160 | EnsemblPlantsGene:Solyc06g065730.2 |
| EnsemblPlants:Solyc06g065730.2.1 | UniParc:UPI0002765992 | InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr6:+:41167913..41208561
Molecular Weight (calculated)
164091.0 Da
IEP (calculated)
5.735
GRAVY (calculated)
-0.529
Length
1437 amino acids
Sequence
(BLAST)
(BLAST)
0001: MTLMMNLIRS LSLDRKTLRE FSVLTRQKDE SCQACGGEGD LLYCESCTYA YHPKCLLPPL KAPLPSSWRC PECVSPLNDI DKILDCEMRP TVADDSDASN
0101: MGSKHVFVKQ YLVKWKGLSY LHCIWVPEKE FLKAYKLHPR LKTKVNNFHR QMSSMTNSEE DYVAIRSEWT TVDRILACRG EGEEKEYLVK WKELPYDECY
0201: WEFESDISSF QQEIERYHRV QFRDDKASSS KQNSVPKETT ELKLKPRELF QQYERSPEFL SGGSLHPYQL EGLNFLRFSW SKQTHVILAD EMGLGKTIQS
0301: IAFLASLFEE DISPHLVVAP LSTLRNWERE FATWAPQMNV VMYVGSAQAR AVIREYEFFF PKNSNKIKKK KSCQTVGESK KDRTKFDVLL TSYEMINMDS
0401: ASLKPIKWEC MIVDEGHRLK NKDSKLFSSL KQYASRHRVL LTGTPLQNNL DELFMLMHFL DAGKFGSLEE FQQEFEDISQ EEQISRLHKM LAPHLLRRVK
0501: KDVMKELPPK KELILRVELS SKQKEYYKAI LTRNFQILAR KGGAQISLIN VVMELRKLCC HPFMLEGVEP EDTNEFTKQL LESSGKLQLL DKMMVKLKDQ
0601: GHRVLIYSQF QHMLDLLEDY CTYKKWHYER IDGKVPGAER QIRIDRFNAK NSSRFCFLLS TRAGGLGINL ATADTVIIYD SDWNPHADLQ AMARAHRLGQ
0701: TNKVMIFRLI LRGTIEERMM QMTKKKMVLE HLVVGRLKAQ NINQEELDDI IRYGSKELFA DENDEAGKLR QIHYDDAAID RLLNRDQVVD EDAAMDDEEE
0801: DSFLKAFKVA NFEYIEEAEA TPEEDIPTPP LENKATVLNS ERATYWEELL RDRYEMHKVE EFNGMGKGKR SRKQMVSVED DDLAGLEEVT SDGEDDNYEA
0901: DLSDGETALP GAPVVRRPYR KRSRVDSSIP LPLMEGEGKS FRVLGFNQSQ RAAFVKVLMR FGVGDYDWAE FTPRLKQKTY EEIKDYGFLF LSHIAEDITE
1001: SPTFRDGVPK EGLRIPDVLL RIAVLLLIRD KVKAFSEETT SPLFAKDIVS WFPGLKGGRV WKEDHDLLLL RAVLKHGYGR WQAIIDDKEL RIQEVVCKEL
1101: NLPSITLPVP GASQPQVPPA PGASQALPAS GVSQVSAPGV YQAPNGLNTA NAGTSGNQVK AADETNHEVS HGTSDPSNRT QLHQDSSLLY HFREMQRRQV
1201: EFIRKRVMLL ENAINAEYQR DVVGCGKPHE LPGKEMERDT KIVDELSRSV EAAGTEMVDN FPKLIAISPQ GISEIACDGE VDRLSVAQLY NKMLASQPAS
1301: LALKRNLLPL EAFFQEMKRV LSSAHQNPGN APGSELQEDW KPEGGNPSPV PSFLRDGRLH TTEGKHDNFP TGTEFVSEGT SNLRTTESNI SHDISPSEIP
1401: GEEIKHCSLN GDTDIEMVEK QDDTYVSTTN VVMDIAE
0101: MGSKHVFVKQ YLVKWKGLSY LHCIWVPEKE FLKAYKLHPR LKTKVNNFHR QMSSMTNSEE DYVAIRSEWT TVDRILACRG EGEEKEYLVK WKELPYDECY
0201: WEFESDISSF QQEIERYHRV QFRDDKASSS KQNSVPKETT ELKLKPRELF QQYERSPEFL SGGSLHPYQL EGLNFLRFSW SKQTHVILAD EMGLGKTIQS
0301: IAFLASLFEE DISPHLVVAP LSTLRNWERE FATWAPQMNV VMYVGSAQAR AVIREYEFFF PKNSNKIKKK KSCQTVGESK KDRTKFDVLL TSYEMINMDS
0401: ASLKPIKWEC MIVDEGHRLK NKDSKLFSSL KQYASRHRVL LTGTPLQNNL DELFMLMHFL DAGKFGSLEE FQQEFEDISQ EEQISRLHKM LAPHLLRRVK
0501: KDVMKELPPK KELILRVELS SKQKEYYKAI LTRNFQILAR KGGAQISLIN VVMELRKLCC HPFMLEGVEP EDTNEFTKQL LESSGKLQLL DKMMVKLKDQ
0601: GHRVLIYSQF QHMLDLLEDY CTYKKWHYER IDGKVPGAER QIRIDRFNAK NSSRFCFLLS TRAGGLGINL ATADTVIIYD SDWNPHADLQ AMARAHRLGQ
0701: TNKVMIFRLI LRGTIEERMM QMTKKKMVLE HLVVGRLKAQ NINQEELDDI IRYGSKELFA DENDEAGKLR QIHYDDAAID RLLNRDQVVD EDAAMDDEEE
0801: DSFLKAFKVA NFEYIEEAEA TPEEDIPTPP LENKATVLNS ERATYWEELL RDRYEMHKVE EFNGMGKGKR SRKQMVSVED DDLAGLEEVT SDGEDDNYEA
0901: DLSDGETALP GAPVVRRPYR KRSRVDSSIP LPLMEGEGKS FRVLGFNQSQ RAAFVKVLMR FGVGDYDWAE FTPRLKQKTY EEIKDYGFLF LSHIAEDITE
1001: SPTFRDGVPK EGLRIPDVLL RIAVLLLIRD KVKAFSEETT SPLFAKDIVS WFPGLKGGRV WKEDHDLLLL RAVLKHGYGR WQAIIDDKEL RIQEVVCKEL
1101: NLPSITLPVP GASQPQVPPA PGASQALPAS GVSQVSAPGV YQAPNGLNTA NAGTSGNQVK AADETNHEVS HGTSDPSNRT QLHQDSSLLY HFREMQRRQV
1201: EFIRKRVMLL ENAINAEYQR DVVGCGKPHE LPGKEMERDT KIVDELSRSV EAAGTEMVDN FPKLIAISPQ GISEIACDGE VDRLSVAQLY NKMLASQPAS
1301: LALKRNLLPL EAFFQEMKRV LSSAHQNPGN APGSELQEDW KPEGGNPSPV PSFLRDGRLH TTEGKHDNFP TGTEFVSEGT SNLRTTESNI SHDISPSEIP
1401: GEEIKHCSLN GDTDIEMVEK QDDTYVSTTN VVMDIAE
0001: MILRVFSNFS LVLFHKKMSS LVERLRIRSD RKPVYNLDDS DDDDFVPKKD RTFEQVEAIV RTDAKENACQ ACGESTNLVS CNTCTYAFHA KCLVPPLKDA
0101: SVENWRCPEC VSPLNEIDKI LDCEMRPTKS SEQGSSDAEP KPIFVKQYLV KWKGLSYLHC SWVPEKEFQK AYKSNHRLKT RVNNFHRQME SFNNSEDDFV
0201: AIRPEWTTVD RILACREEDG ELEYLVKYKE LSYDECYWES ESDISTFQNE IQRFKDVNSR TRRSKDVDHK RNPRDFQQFD HTPEFLKGLL HPYQLEGLNF
0301: LRFSWSKQTH VILADEMGLG KTIQSIALLA SLFEENLIPH LVIAPLSTLR NWEREFATWA PQMNVVMYFG TAQARAVIRE HEFYLSKDQK KIKKKKSGQI
0401: SSESKQKRIK FDVLLTSYEM INLDSAVLKP IKWECMIVDE GHRLKNKDSK LFSSLTQYSS NHRILLTGTP LQNNLDELFM LMHFLDAGKF GSLEEFQEEF
0501: KDINQEEQIS RLHKMLAPHL LRRVKKDVMK DMPPKKELIL RVDLSSLQKE YYKAIFTRNY QVLTKKGGAQ ISLNNIMMEL RKVCCHPYML EGVEPVIHDA
0601: NEAFKQLLES CGKLQLLDKM MVKLKEQGHR VLIYTQFQHM LDLLEDYCTH KKWQYERIDG KVGGAERQIR IDRFNAKNSN KFCFLLSTRA GGLGINLATA
0701: DTVIIYDSDW NPHADLQAMA RAHRLGQTNK VMIYRLINRG TIEERMMQLT KKKMVLEHLV VGKLKTQNIN QEELDDIIRY GSKELFASED DEAGKSGKIH
0801: YDDAAIDKLL DRDLVEAEEV SVDDEEENGF LKAFKVANFE YIDENEAAAL EAQRVAAESK SSAGNSDRAS YWEELLKDKF ELHQAEELNA LGKRKRSRKQ
0901: LVSIEEDDLA GLEDVSSDGD ESYEAESTDG EAAGQGVQTG RRPYRRKGRD NLEPTPLMEG EGRSFRVLGF NQSQRAIFVQ TLMRYGAGNF DWKEFVPRLK
1001: QKTFEEINEY GILFLKHIAE EIDENSPTFS DGVPKEGLRI EDVLVRIALL ILVQEKVKFV EDHPGKPVFP SRILERFPGL RSGKIWKEEH DKIMIRAVLK
1101: HGYGRWQAIV DDKELGIQEL ICKELNFPHI SLSAAEQAGL QGQNGSGGSN PGAQTNQNPG SVITGNNNAS ADGAQVNSMF YYRDMQRRLV EFVKKRVLLL
1201: EKAMNYEYAE EYYGLGGSSS IPTEEPEAEP KIADTVGVSF IEVDDEMLDG LPKTDPITSE EIMGAAVDNN QARVEIAQHY NQMCKLLDEN ARESVQAYVN
1301: NQPPSTKVNE SFRALKSING NINTILSITS DQSKSHEDDT KPDLNNVEMK DTAEETKPLR GGVVDLNVVE GEENIAEASG SVDVKMEEAK EEEKPKNMVV
1401: D
0101: SVENWRCPEC VSPLNEIDKI LDCEMRPTKS SEQGSSDAEP KPIFVKQYLV KWKGLSYLHC SWVPEKEFQK AYKSNHRLKT RVNNFHRQME SFNNSEDDFV
0201: AIRPEWTTVD RILACREEDG ELEYLVKYKE LSYDECYWES ESDISTFQNE IQRFKDVNSR TRRSKDVDHK RNPRDFQQFD HTPEFLKGLL HPYQLEGLNF
0301: LRFSWSKQTH VILADEMGLG KTIQSIALLA SLFEENLIPH LVIAPLSTLR NWEREFATWA PQMNVVMYFG TAQARAVIRE HEFYLSKDQK KIKKKKSGQI
0401: SSESKQKRIK FDVLLTSYEM INLDSAVLKP IKWECMIVDE GHRLKNKDSK LFSSLTQYSS NHRILLTGTP LQNNLDELFM LMHFLDAGKF GSLEEFQEEF
0501: KDINQEEQIS RLHKMLAPHL LRRVKKDVMK DMPPKKELIL RVDLSSLQKE YYKAIFTRNY QVLTKKGGAQ ISLNNIMMEL RKVCCHPYML EGVEPVIHDA
0601: NEAFKQLLES CGKLQLLDKM MVKLKEQGHR VLIYTQFQHM LDLLEDYCTH KKWQYERIDG KVGGAERQIR IDRFNAKNSN KFCFLLSTRA GGLGINLATA
0701: DTVIIYDSDW NPHADLQAMA RAHRLGQTNK VMIYRLINRG TIEERMMQLT KKKMVLEHLV VGKLKTQNIN QEELDDIIRY GSKELFASED DEAGKSGKIH
0801: YDDAAIDKLL DRDLVEAEEV SVDDEEENGF LKAFKVANFE YIDENEAAAL EAQRVAAESK SSAGNSDRAS YWEELLKDKF ELHQAEELNA LGKRKRSRKQ
0901: LVSIEEDDLA GLEDVSSDGD ESYEAESTDG EAAGQGVQTG RRPYRRKGRD NLEPTPLMEG EGRSFRVLGF NQSQRAIFVQ TLMRYGAGNF DWKEFVPRLK
1001: QKTFEEINEY GILFLKHIAE EIDENSPTFS DGVPKEGLRI EDVLVRIALL ILVQEKVKFV EDHPGKPVFP SRILERFPGL RSGKIWKEEH DKIMIRAVLK
1101: HGYGRWQAIV DDKELGIQEL ICKELNFPHI SLSAAEQAGL QGQNGSGGSN PGAQTNQNPG SVITGNNNAS ADGAQVNSMF YYRDMQRRLV EFVKKRVLLL
1201: EKAMNYEYAE EYYGLGGSSS IPTEEPEAEP KIADTVGVSF IEVDDEMLDG LPKTDPITSE EIMGAAVDNN QARVEIAQHY NQMCKLLDEN ARESVQAYVN
1301: NQPPSTKVNE SFRALKSING NINTILSITS DQSKSHEDDT KPDLNNVEMK DTAEETKPLR GGVVDLNVVE GEENIAEASG SVDVKMEEAK EEEKPKNMVV
1401: D
Arabidopsis Description
PKLchromatin remodeling factor CHD3 (PICKLE) [Source:TAIR;Acc:AT2G25170]
SUBAcon: [cytosol,mitochondrion]
SUBAcon: [cytosol,mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.