Factsheet for Solyc01g090650.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066819	Potato	cytosol	57.59	95.15
GSMUA_AchrUn_...	Banana	cytosol	53.34	67.42
VIT_15s0021g02180.t01	Wine grape	cytosol	74.06	53.1
KRH75253	Soybean	cytosol, nucleus, plastid	68.35	47.72
CDX74702	Canola	cytosol	66.39	46.78
CDY18960	Canola	cytosol	65.91	46.49
AT2G44980.2	Thale cress	cytosol	65.58	45.84
TraesCS5A01G541400.1	Wheat	cytosol	63.46	44.1
OQU93492	Sorghum	cytosol	64.76	43.77
HORVU4Hr1G088540.8	Barley	cytosol	62.81	43.65
TraesCS4B01G372600.1	Wheat	cytosol	62.32	43.31
Zm00001d048552_P005	Maize	cytosol	63.62	43.14
TraesCS4D01G364600.1	Wheat	cytosol, mitochondrion	61.5	42.74
Bra004881.1-P	Field mustard	nucleus	41.11	38.95
Solyc02g062780.2.1	Tomato	cytosol	31.0	24.64
Solyc02g085390.2.1	Tomato	cytosol	31.97	24.17
Solyc08g029120.1.1	Tomato	nucleus	27.41	23.8
Solyc02g014770.2.1	Tomato	nucleus	27.9	23.17
GSMUA_AchrUn_...	Banana	cytosol, nucleus	11.58	21.39
Solyc01g079690.2.1	Tomato	nucleus	33.77	20.8
Solyc06g054560.2.1	Tomato	nucleus	35.07	20.26
Solyc01g067390.2.1	Tomato	nucleus	34.42	19.81
Solyc06g065730.2.1	Tomato	nucleus	33.12	14.13
Solyc04g016370.2.1	Tomato	nucleus	33.61	13.39
Solyc12g099910.1.1	Tomato	nucleus	34.75	12.48
Solyc03g063220.1.1	Tomato	nucleus	31.0	11.82
Solyc02g068560.2.1	Tomato	nucleus	34.75	8.94
Solyc01g094800.2.1	Tomato	nucleus	30.18	8.27
Os03t0352500-01	Rice	nucleus	2.77	7.94
Solyc11g062010.1.1	Tomato	nucleus	34.42	7.91
Os03t0352450-00	Rice	nucleus	1.47	1.96

Protein Annotations

MapMan:12.4.1.1.1	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	InterPro:ALC1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004003	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259
GO:GO:0006281	GO:GO:0006338	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	GO:GO:0032508	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR038718	UniProt:K4AZ06	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271
PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799	PANTHER:PTHR10799:SF813	SMART:SM00487	SMART:SM00490
InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc01g090650.1	EnsemblPlants:Solyc01g090650.1.1	UniParc:UPI0002761F5F
SEG:seg	:	:	:	:	:

Description

Probable helicase CHR10 [Source:Projected from Arabidopsis thaliana (AT2G44980) UniProtKB/Swiss-Prot;Acc:F4IV45]

Coordinates

chr1:-:84288640..84298566

Molecular Weight (calculated)

69031.7 Da

IEP (calculated)

6.582

GRAVY (calculated)

-0.103

Length

613 amino acids

Sequence
(BLAST)

001: MNFEQRLIAA AKFVYAGDSV ADDPPVNSVD FGVEAALKPH QVEGVSWLVR RYLLGVNVIL GDEMGLGKTL QAISLLSYLK VYLKTPGPFL VLCPLSVTDG
101: WMSEMANFAP KLRVLSYTGD KEHRCNLRRK IYESMNREAS VAKSLPFDVL LTTYDIVLLD EDFLSQVPWC YAIIDEAQRL KNPSSVLYNV LKERFVMPRK
201: LLMTGTPIQN NLSELWALLH FCMPSVFGTV EQFLSAFKEA GDPSCPDADK AKEQFKILKY VIGAFMLRRT KSQLIELGTL VLPPLTEITV MAPLVALQKK
301: VYMSILRKEL SQLLALASGA PNTRSLQNIV IQLRKACSHP YLFAGIEPEP YEEGEHLVQA SGKLLILDHL LQKLHACGHR VLLFSQMTQT LDILQDYLEL
401: RKYSYERLDG SIRAEERFAA IRSFSHNRSK FEAEQNAAFV FLISTRAGGV GLNLVAADTV IFYEQDWNPQ VDKQALQRAH RIGQTNHVLS INLVTEQSVE
501: EVIMRRAQRK LQLSHNIVGD DVLDQEGKEM AGAEAGDLRS VMLGLHMLDP AEVTNEESDK FDRNELTAMA ETIMAFRNKE RSARDDKFEV KPANFLSEFN
601: VVTKRGPESV KLA

Best Arabidopsis Sequence Match ( AT2G44980.3 )
(BLAST)

001: MSKESSPPKV PSTTMEYERR LEAAAEIILE KEAKFSNTPP DCSEFGVTAT LKPHQVEGVS WLIQKYLLGV NVVLGDEMGL GKTLQAISFL SYLKFRQGLP
101: GPFLVLCPLS VTDGWVSEIN RFTPNLEVLR YVGDKYCRLD MRKSMYDHVK KSSKGHFLPF DVLLTTYDIA LVDQDFLSQI PWQYAIIDEA QRLKNPNSVL
201: YNVLLEQFLI PRRLLITGTP IQNNLTELWA LMHFCMPLVF GTLDQFLSAF KETGDGLSGL DVSNDKETYK SLKFILGAFM LRRTKSLLIE SGNLVLPPLT
301: ELTVMVPLVS LQKKIYTSIL RKELPGLLEL SSGGSNHTSL QNIVIQLRKA CSHPYLFPGI EPEPFEEGEH LVQASGKLLV LDQLLKRLHD SGHRVLLFSQ
401: MTSTLDILQD FMELRRYSYE RLDGSVRAEE RFAAIKNFSA KTERGLDSEV DGSNAFVFMI STRAGGVGLN LVAADTVIFY EQDWNPQVDK QALQRAHRIG
501: QISHVLSINL VTEHSVEEVI LRRAERKLQL SHNVVGDNME EKEEDGGDLR SLVFGLQRFD PEEIHNEESD NLKMVEISSL AEKVVAIRQN VEPDKEERRF
601: EINSSDTLLG NTSSASLDSE LDEASYLSWV EKLKEAARSS KDEKIIELGN RKNLSEERNL RIEAARKKAE EKKLATWGAH GYQSLSVEEP ILPDDVDSSS
701: DAGSVNFVFG DCTNPSTVSH EPAIIFSCVD DSGNWGRGGM FDALSKLSNT VPTAYHRASE FKDLHLGDLH LIKIDDNDDQ QNTQASKPLW VAVAVTQSYN
801: SRRKVPRSSI SIPDLESCLA KASFSASQKS ASLHMPRIGY QDGSDRSQWY TVERLLRKYS SIFTVKIFVY YYRRSP

Arabidopsis Description

CHR10Probable helicase CHR10 [Source:UniProtKB/Swiss-Prot;Acc:F4IV45]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.