Factsheet for Solyc02g014770.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g072580.1.1
Solyc07g045160.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02090.1	Solyc04g072580.1.1	AT5G56630.1	21798944
AT2G02090.1	Solyc07g045160.2.1	AT5G56630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0010g02080.t01	Wine grape	cytosol	73.58	74.59
KRG89166	Soybean	nucleus	71.0	69.68
KRH49484	Soybean	nucleus	71.14	69.63
Bra017422.1-P	Field mustard	cytosol	71.27	69.03
CDY04120	Canola	cytosol	70.87	68.82
CDY48619	Canola	nucleus, plastid	70.87	68.37
AT2G02090.1	Thale cress	cytosol, plastid	70.46	68.15
GSMUA_Achr4P25930_001	Banana	cytosol	67.75	61.96
Zm00001d015595_P001	Maize	cytosol	16.26	60.91
Os04t0566100-00	Rice	cytosol	66.67	57.01
TraesCS2A01G403300.2	Wheat	cytosol, nucleus	64.09	54.43
TraesCS2D01G400400.1	Wheat	cytosol	64.63	54.27
TraesCS2B01G421200.3	Wheat	cytosol	64.5	53.42
KXG26914	Sorghum	nucleus	66.4	50.46
Zm00001d002656_P002	Maize	nucleus	65.85	49.64
Solyc01g090650.1.1	Tomato	cytosol, nucleus, plastid	23.17	27.9
Solyc02g062780.2.1	Tomato	cytosol	26.15	25.03
Solyc02g085390.2.1	Tomato	cytosol	26.42	24.04
Solyc08g029120.1.1	Tomato	nucleus	22.9	23.94
Solyc01g079690.2.1	Tomato	nucleus	27.24	20.2
Solyc06g054560.2.1	Tomato	nucleus	26.56	18.47
Solyc01g067390.2.1	Tomato	nucleus	26.56	18.4
Solyc03g063220.1.1	Tomato	nucleus	30.22	13.87
Solyc04g016370.2.1	Tomato	nucleus	28.46	13.65
Solyc06g065730.2.1	Tomato	nucleus	26.42	13.57
Solyc12g099910.1.1	Tomato	nucleus	26.69	11.54
Solyc01g094800.2.1	Tomato	nucleus	25.47	8.41
Solyc02g068560.2.1	Tomato	nucleus	26.69	8.27
Solyc11g062010.1.1	Tomato	nucleus	28.05	7.76
PGSC0003DMT400011842	Potato	nucleus	3.12	3.33
Os02t0114033-00	Rice	nucleus	2.3	1.97
Os02t0114000-01	Rice	cytosol, nucleus	0.0	0.0

Protein Annotations

MapMan:12.4.1.2.1	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	GO:GO:0006950	GO:GO:0006974	GO:GO:0008150	GO:GO:0009628	GO:GO:0009987
GO:GO:0071494	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR038718
UniProt:K4B4S6	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PANTHER:PTHR10799	PANTHER:PTHR10799:SF845	SMART:SM00487	SMART:SM00490	InterPro:SNF2-like_sf	InterPro:SNF2_N
SUPFAM:SSF52540	EnsemblPlantsGene:Solyc02g014770.2	EnsemblPlants:Solyc02g014770.2.1	UniParc:UPI000276844E	SEG:seg	:

Description

Protein CHROMATIN REMODELING 19 [Source:Projected from Arabidopsis thaliana (AT2G02090) UniProtKB/Swiss-Prot;Acc:Q9ZUL5]

Coordinates

chr2:+:18358168..18376521

Molecular Weight (calculated)

83782.7 Da

IEP (calculated)

4.968

GRAVY (calculated)

-0.385

Length

738 amino acids

Sequence
(BLAST)

001: MKRDYYEISD DEWPEDNSFN PSRVLKHKPS APPPPIESFI YSNTTNQNTS KSSNFIQVLD SSSEEMGLGN ASENLEDDDV EIDSTINQTN SRARRRFVVD
101: DEDEGFNSNE EEELFELSDN QESDEEVEDV VGKALQKCGK ISMELKRELF GTAAAKCDSF VEVEEASSLR IVTQDDIDMA CGEEDSDFKP ILKPYQLVGV
201: NFLLLLYRKK IGGAILADEM GLGKTIQAIT YLTLLKHLED DPGPHLIVCP ASVLENWERE LKKWCPAFTV IQYHGSARSS YSKDLSSLSR TGQPPPFNVI
301: LVCYSLFERH SAQQKDDRKI LKRWCWSCVL MDEAHALKDK GSYRWKNLMS VARNANQRLM LTGTPLQNDL HELWSILEFM MPDLFETGDV DLKKLLNAED
401: KELIARIKSI LGPFILRRLK SDVMKQLVPK IQTVRYVGME KQQEDAYKEA IESYRAASLA RVSKQPVSLT NAAGVFSRRQ ISNYFLEFRK IANHPLLVRR
501: IYTDDDVVRI ARVVHPKGVF GFECTVDRVI EELKSYNDFS IHKLLLYYGD NNKGVLSDER VMISAKCQEL AKLLPSLNLS GHRVLIFSQW TSMLDILEWT
601: LDVIGVTYRR LDGSTQVTER QTIVDTFNKD TSIFACLLST RAGGQGLNLT GADTVIIHDM DFNPQIDRQA EDRCHRIGQN KPVTVYRLVT RNTVDENVYE
701: IAKRKLTLDA AILESGAQIE NEGDAKTMGE ILSSLLLG

Best Arabidopsis Sequence Match ( AT2G02090.1 )
(BLAST)

001: MKRDFDEISE EEWSQHSFNA SRVLKRPRTP KKTRAATNPT PSIESFAFRR PSTAMTIESN SSDGDCVEIE DLGDSDSDVK IVNGEDLLLE DEEEVEETKV
101: VMRAARVGRR FVIEDEEASD DDDDEAESSA SEDEFGGGGG GSGGRRGEDE DVVGKALQKC AKISADLRKE LYGTSSGVTD RYSEVETSTV RIVTQNDIDD
201: ACKAEDSDFQ PILKPYQLVG VNFLLLLYKK GIEGAILADE MGLGKTIQAI TYLTLLSRLN NDPGPHLVVC PASVLENWER ELRKWCPSFT VLQYHGAARA
301: AYSRELNSLS KAGKPPPFNV LLVCYSLFER HSEQQKDDRK VLKRWRWSCV LMDEAHALKD KNSYRWKNLM SVARNANQRL MLTGTPLQND LHELWSLLEF
401: MLPDIFTTEN VDLKKLLNAE DTELITRMKS ILGPFILRRL KSDVMQQLVP KIQRVEYVLM ERKQEDAYKE AIEEYRAASQ ARLVKLSSKS LNSLAKALPK
501: RQISNYFTQF RKIANHPLLI RRIYSDEDVI RIARKLHPIG AFGFECSLDR VIEEVKGFND FRIHQLLFQY GVNDTKGTLS DKHVMLSAKC RTLAELLPSM
601: KKSGHRVLIF SQWTSMLDIL EWTLDVIGVT YRRLDGSTQV TDRQTIVDTF NNDKSIFACL LSTRAGGQGL NLTGADTVII HDMDFNPQID RQAEDRCHRI
701: GQTKPVTIFR LVTKSTVDEN IYEIAKRKLV LDAAVLESGV HVDDNGDTPE KTMGEILASL LMG

Arabidopsis Description

ETL1ETL1 [Source:UniProtKB/TrEMBL;Acc:A0A178VWA6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.