Factsheet for Os04t0566100-00

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os05t0524400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02090.1	Os05t0524400-01	AT5G56630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G403300.2	Wheat	cytosol, nucleus	81.34	80.78
TraesCS2D01G400400.1	Wheat	cytosol	81.69	80.2
TraesCS2B01G421200.3	Wheat	cytosol	81.58	79.01
KXG26914	Sorghum	nucleus	80.53	71.58
VIT_01s0010g02080.t01	Wine grape	cytosol	59.56	70.6
Zm00001d002656_P002	Maize	nucleus	79.14	69.77
GSMUA_Achr4P25930_001	Banana	cytosol	64.89	69.39
KRG89166	Soybean	nucleus	60.37	69.28
KRH49484	Soybean	nucleus	59.79	68.44
AT2G02090.1	Thale cress	cytosol, plastid	59.56	67.37
Bra017422.1-P	Field mustard	cytosol	59.44	67.32
CDY04120	Canola	cytosol	59.1	67.11
CDY48619	Canola	nucleus, plastid	59.21	66.8
Solyc02g014770.2.1	Tomato	nucleus	57.01	66.67
Os09t0442700-01	Rice	cytosol	24.1	24.62
Os03t0722400-01	Rice	cytosol	24.1	24.5
Os05t0144300-01	Rice	nucleus	25.14	19.24
Os01t0367900-01	Rice	nucleus	22.36	17.43
Os05t0150300-01	Rice	nucleus	22.71	16.93
Os01t0881000-00	Rice	nucleus	20.97	16.44
Os07t0660200-01	Rice	nucleus	9.5	13.0
Os03t0352500-01	Rice	nucleus	2.55	10.28
Os07t0497100-01	Rice	nucleus	23.06	8.81
Os02t0689800-01	Rice	nucleus	10.2	8.26
Os03t0352450-00	Rice	nucleus	3.13	5.88
Os02t0114033-00	Rice	nucleus	2.78	2.77
Os06t0255200-02	Rice	cytosol, nucleus, plastid	1.16	1.53
Os02t0114000-01	Rice	cytosol, nucleus	0.0	0.0
Os06t0183800-01	Rice	cytosol, nucleus	0.0	0.0

Protein Annotations

MapMan:12.4.1.2.1	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	EntrezGene:9270561	ProteinID:BAS90526.1	ProteinID:CAE02069.2
ProteinID:CAE03103.2	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0006950
GO:GO:0006974	GO:GO:0008150	GO:GO:0009628	GO:GO:0009987	GO:GO:0071494	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR038718	EnsemblPlantsGene:Os04g0566100	EnsemblPlants:Os04t0566100-00
InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799
PANTHER:PTHR10799:SF845	UniProt:Q7XQJ0	SMART:SM00487	SMART:SM00490	InterPro:SNF2-like_sf	InterPro:SNF2_N
SUPFAM:SSF52540	UniParc:UPI000021C6E8	RefSeq:XP_015636856.1	SEG:seg	:	:

Description

Similar to OSIGBa0158F05.11 protein. (Os04t0566100-00)

Coordinates

chr4:+:28379508..28385496

Molecular Weight (calculated)

97169.4 Da

IEP (calculated)

4.907

GRAVY (calculated)

-0.512

Length

863 amino acids

Sequence
(BLAST)

001: MRRGYEEIDD DEWSNHSFKP SRVLKRPSRG AQPDSQPPPP IDSFRYNPRP SSSSAAAAAT ATVVLSDDDD DFELGEEERL RRAGKSTRVL NRPQRQHSPP
101: GRALPPRESF RYNPKPAKAA AAVSVSDDDD DGFDLEDDDF DIPSSRTSRP RRTAGRRLAT AVADLSEEDD DLELADDDFD HPDPRPTRPR RATARRFVIK
201: DDDDSDGDVG ASEVDGVEAE EDDGVNWSEL ENEDDEDGDY GETKVEVEEG DVVGKALRKC ARISADLRQE LYGSSTRNCE SYAEIDDSSV RIVTQDDVDA
301: ACTSEESEFE PILKPYQLVG VNFLLLLHRK NIGGAILADE MGLGKTVQAV TYLTLLRHLY NDPGPHLIVC PASVLENWER ELKKWCPSFS IIMFHGAGRT
401: AYSKELSSLG KAGYPPPFNV LLVCYSLFER RSAQQKDDRK ALKRWRWSCV LMDEAHVLKD KGSFRWRNLM AVAQHARQRL MLTGTPLQND LHELWSLLEF
501: MMPDIFATGD IDLKKLLNAE DHELISRIKS ILGPFILRRL KSDVMQQLVP KIQHVNFVTM DSEQFQAYNY AIDEYRGACQ ARSAKSTSNF SNNVVGLIPK
601: RQISNYFMQF RKIANHPLLI RRIYSDKDVD RIAKLLYPKG AFGFECSLER ATQELRKYND FAIHQLLVSY GDSGTKGALT DEHVLGSAKC QALAELLPSL
701: ANDGHRVLIF SQWTTMLDIL EWTLEVIGVT YRRLDGGTPV TERQTIVDTF NNDRSIFACL LSTRAGGQGL NLIGADTVII HDMDFNPQMD RQAEDRCHRI
801: GQQKPVTIYR LVTKGSVDEN IYEIARRKLV LDAAILQSGA ELEDSTDVPE KTMGEILASL LLV

Best Arabidopsis Sequence Match ( AT2G02090.1 )
(BLAST)

001: MKRDFDEISE EEWSQHSFNA SRVLKRPRTP KKTRAATNPT PSIESFAFRR PSTAMTIESN SSDGDCVEIE DLGDSDSDVK IVNGEDLLLE DEEEVEETKV
101: VMRAARVGRR FVIEDEEASD DDDDEAESSA SEDEFGGGGG GSGGRRGEDE DVVGKALQKC AKISADLRKE LYGTSSGVTD RYSEVETSTV RIVTQNDIDD
201: ACKAEDSDFQ PILKPYQLVG VNFLLLLYKK GIEGAILADE MGLGKTIQAI TYLTLLSRLN NDPGPHLVVC PASVLENWER ELRKWCPSFT VLQYHGAARA
301: AYSRELNSLS KAGKPPPFNV LLVCYSLFER HSEQQKDDRK VLKRWRWSCV LMDEAHALKD KNSYRWKNLM SVARNANQRL MLTGTPLQND LHELWSLLEF
401: MLPDIFTTEN VDLKKLLNAE DTELITRMKS ILGPFILRRL KSDVMQQLVP KIQRVEYVLM ERKQEDAYKE AIEEYRAASQ ARLVKLSSKS LNSLAKALPK
501: RQISNYFTQF RKIANHPLLI RRIYSDEDVI RIARKLHPIG AFGFECSLDR VIEEVKGFND FRIHQLLFQY GVNDTKGTLS DKHVMLSAKC RTLAELLPSM
601: KKSGHRVLIF SQWTSMLDIL EWTLDVIGVT YRRLDGSTQV TDRQTIVDTF NNDKSIFACL LSTRAGGQGL NLTGADTVII HDMDFNPQID RQAEDRCHRI
701: GQTKPVTIFR LVTKSTVDEN IYEIAKRKLV LDAAVLESGV HVDDNGDTPE KTMGEILASL LMG

Arabidopsis Description

ETL1ETL1 [Source:UniProtKB/TrEMBL;Acc:A0A178VWA6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.